Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq18715 289 2e-73 seq48925 100 2e-16 seq61578 98.7 8e-16 seq9460 91.5 1e-13 >seq18715 Length=1377716 Score = 289 bits (320), Expect = 2e-73 Identities = 603/887 (68%), Gaps = 21/887 (2%) Strand=Plus/Minus Query 91075 ACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTTACTAGAATCAACA 91134 || || |||||||| || |||||||| || ||||| | | || || ||| | || Sbjct 1370873 ACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACG 1370814 Query 91135 CCTTGTTTTGTGAGCAT---TTGCACGGCATGATGCGTGGTGTACAACTCGTTCGGGTTC 91191 ||||| | |||| || ||| || | ||||| || || || |||||| Sbjct 1370813 CCTTGA---GCAAGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTC 1370757 Query 91192 CATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAATCGGTATTTGACCAAGCTCCTTTA 91251 || || ||||| || | || |||| || | | ||| ||||| || |||||| Sbjct 1370756 CAAGCAGGAGCGTAAAGCGGTGTCTGATGACCGAGGGTGTCATTAGACCAGGCGCCTTTA 1370697 Query 91252 AAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGTGCAGCGTCATAATCGACA 91311 ||||| ||| |||||| | || | | || | || || || || |||||||| Sbjct 1370696 AAATCATAACTCATGAGGAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACC 1370637 Query 91312 AGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAATTCGTACACTTTACCTGTT 91371 | || ||||| || | || |||| || ||| |||| ||||| ||||| || Sbjct 1370636 ACTTGAATCTTATCCCATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTC 1370577 Query 91372 TGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAGCAAAACAATGTATGTAGCA 91431 | | | | || | |||||| |||||||| || || | || ||| ||| | | Sbjct 1370576 TCTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCT 1370517 Query 91432 GCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCCCGGAAATTCCCAA 91491 |||| || || || | | | || ||||| || |||||||| || ||||||||| Sbjct 1370516 CCGTCC---TTAGGGCTTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAA 1370460 Query 91492 TCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTTAACCGAATCAACG 91551 || ||||| |||||||| || || ||||| | | | ||| ||||| || ||||||||| Sbjct 1370459 TCGATATCAACACCGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACG 1370400 Query 91552 AAC--ACGTTTCTTCG-TTTGACATCGTGCATAAAATAGAACGGGTCCGACAAAGTCCAG 91608 || || | ||||| |||| | ||| | || | |||| || || | | ||||||| Sbjct 1370399 AAGCGACCTCTCTTCTCTTTGTCG--GTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAG 1370343 Query 91609 CCACCGATGGACGGTAAAACTTTTAAATGCGGGT-TGGCCAACTTGGCGGCCATTATCTG 91667 || |||||||| |||| || |||||| | | || |||| ||| | ||| | ||| Sbjct 1370342 CCTCCGATGGAAGGTAGAA-TTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTG 1370284 Query 91668 ACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTAT 91727 |||||||||||| ||||| || || ||||| | || | || || ||||| || || | Sbjct 1370283 ACCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAG 1370224 Query 91728 GGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTG 91787 || |||||||| ||||| || |||||||| ||||| ||||| || |||| |||||||| Sbjct 1370223 AGCGGCCCACGGGTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTG 1370164 Query 91788 CAAATTTTCAAAACTACC--AGGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCG 91845 | | || ||||| || | | | ||| | | ||||| | || ||||||||| Sbjct 1370163 AAGAGCTTGGAAACTGCCTTCGATCTCCTTTAAACTG--TCGTTGATGCCGTCGCCTCCG 1370106 Query 91846 CAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAGCGGCACCTTGTCGATT 91905 ||||| || || ||||||||||| ||||| | || ||| || | ||| || |||| | Sbjct 1370105 CAAATAGGAATGAAACCGTACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACT 1370046 Query 91906 GGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGCGGCGAC 91952 || || || | | ||| || |||||||||||||||||||| |||| Sbjct 1370045 GGGAATTTTCTTGGGTAAACACCCCATTCAACAAAGTACGCTCCGAC 1369999 >seq48925 Length=1097090 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | |||| ||||||||||||||| || || ||||||||||||| | Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || |||||||| || |||| | |||||| ||||| || Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||||| | || || || | | | | ||||||| || || Sbjct 515283 ATGCCCTCTTTGTCTTGAATTT-TCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 515225 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | || ||| |||| || || | |||||||| || || |||||| || Sbjct 515224 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTT 515173 >seq61578 Length=3623949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||| ||||| |||||||||||||| | || ||| | |||| Sbjct 3474651 AGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCT 3474592 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| || |||| | |||||| || || ||| | ||| ||||| || Sbjct 3474591 TCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 3474532 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||||| ||| || ||| | |||||| | Sbjct 3474531 TGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTC 3474472 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 3474471 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||| ||||| |||||||||||||| | || ||| | |||| Sbjct 3474423 AGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCT 3474364 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| || |||| | ||| || || || ||| | ||| ||||| || Sbjct 3474363 TCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 3474304 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||||| ||| || ||| | |||||| || Sbjct 3474303 TGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTT 3474244 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 3474243 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||| ||||| |||||||||||||| | || ||| | |||| Sbjct 3474195 AGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCT 3474136 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||| ||| || |||| | ||| || || | ||| | ||| ||||| || Sbjct 3474135 TCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCT 3474076 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||||| ||||| || | ||||||| | Sbjct 3474075 TGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTC 3474016 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| ||||| || || || ||||| |||||||| Sbjct 3474015 TTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTT 3473981 >seq9460 Length=1391182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20411 AAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCTTCTTGCCAA 20470 || || || ||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 538760 AAGGGGCACTGCGGGGCCCACCGCTGGTGGTCCTTAGCGGGGTCGTCGCCCTCCACCCAG 538701 Query 20471 TGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCCAAATAATAG 20530 |||| ||||| ||||| ||||| || ||||| || ||||| |||| || | || ||| Sbjct 538700 CGCATGATTTCGACTTTACAAAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTAGTAG 538641 Query 20531 AACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTT 20580 || |||||| ||| | ||||| || | | ||| |||||||| || Sbjct 538640 AAGCCGTTGCGCGCTAGCTGCTCGGGCGAAAGAAAGTCCACGGGCCACTT 538591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379051870386315