Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq48925 556 2e-153 seq48068 93.3 5e-14 >seq48925 Length=1097090 Score = 556 bits (616), Expect = 2e-153 Identities = 1208/1790 (67%), Gaps = 36/1790 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||| ||||| | | | || || || | |||| ||| |||||||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| | ||||| ||||||| || || ||| | ||| |||| | || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | ||| || || | ||||||||||| || || || ||||| ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 ||||| || | || || || ||| ||||||| |||||||| ||||| || |||||| Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATATC 840063 Query 62276 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || ||| | | | |||| |||||||| ||| | || ||| |||||| || Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 || || | |||||| | | || ||||| |||| | | ||| ||||||| || || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 ||||||||||||||| || | | |||||| || || ||||||| | ||||| Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTC 840243 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA-AACT-- 62509 ||||||||| || ||||| || || || || || ||||| || || | ||| || | Sbjct 840244 ATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTA---ATAGAAGTGA 840300 Query 62510 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 ||| | || || ||||| | ||||||||||| ||| ||| ||||| ||||| Sbjct 840301 ATTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCA 840358 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62626 | || | |||||| | || || | || || | || |||| | Sbjct 840359 GTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACT-TCCTTC 840417 Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686 ||||||| ||| ||| || || | || |||| |||||| || |||||||| ||||| Sbjct 840418 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTA 840477 Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 ||| |||||||| ||||| | | || || | |||||| || ||| ||||| Sbjct 840478 ATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 840537 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | || | ||| | || ||||| ||||| || |||||||| |||||||| || | Sbjct 840538 GCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACG 840597 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | | ||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| || Sbjct 840598 CATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 840657 Query 62867 ATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT- 62924 || | || | | ||||| || || |||| || | ||| | || |||| Sbjct 840658 GTTCTGTGTGATTATCTTTGTG-ACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 62925 -ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 |||| ||||| | ||||| |||| || || | |||||| || || || |||| || Sbjct 840717 CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTG 840776 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 | |||| | || || ||||| | |||||| || || || || || | ||||| || Sbjct 840777 AAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTT 840836 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 ||||||| ||| | ||||| | ||| ||||| || ||| |||| || || ||||| | | Sbjct 840837 GATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTT 840896 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCT 63157 | | |||||| || |||||||| | || |||| ||| ||| | |||| Sbjct 840897 GTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCT 840951 Query 63158 CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63217 |||| ||| ||| ||||||| ||| || || ||||||||| || | | Sbjct 840952 TTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAG 841011 Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 | || || |||| |||||||| | |||| | | || | | || |||||||| Sbjct 841012 ACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCAT 841071 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 ||| | ||| || ||||| | || ||||| ||||| | || || || || || Sbjct 841072 AAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCC 841131 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 ||||||||||| ||||| | ||| | | || |||||| ||||| ||||| | ||| || Sbjct 841132 AGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAAT 841191 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | |||| || ||||| || ||||| || || | || || || || ||||| || Sbjct 841192 AGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTA 841251 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 |||||||||||||| | | || || || | ||||| ||||| | || ||| || Sbjct 841252 CACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACC 841311 Query 63518 ACTGGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | || | || | || ||| || ||||| || || || ||| |||||||| | Sbjct 841312 TTTTGCCCTGATGCAATGAACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAAGG 841370 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||||| |||||||| || || || ||||||||||| |||| | || | Sbjct 841371 CACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGA 841430 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||| | ||| | | | |||| | || ||||| || ||| || || | Sbjct 841431 AGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAG 841490 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGA 63755 |||| |||||||||| | | |||||| || ||||| ||||| || || || || | Sbjct 841491 TAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG- 841549 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 || ||||| | | ||| ||||| | ||| ||||||||||||||| |||| Sbjct 841550 TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAAT 841599 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || |||||||| ||||||| ||| || || |||| ||| || ||||| | ||||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | |||||| ||||| || |||| || || | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 64137 GTTACTCC 64144 |||||||| Sbjct 842894 GTTACTCC 842901 >seq48068 Length=254185 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||||| ||| ||||| || | ||| || || || || || || Sbjct 225385 AAGGTCAGACCAGGCATTAAGCCGCGCTTCTTCAACCAGAAAATTGATGCAAAGCTACCA 225326 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 ||||||||||||||||| || ||||||||||||| | ||| || || || |||| Sbjct 225325 GAAAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATTCTTTCCCC--AAAGTTTGCTG 225268 Query 33753 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || || ||||| | | ||||| || |||||||| |||||||| || | |||| Sbjct 225267 TCTTGCTGGCGATCCATTGCAGTGCCCAGTCTGCCTTCTTCTTTACACATGGTAAAGTTT 225208 Query 33808 CTATGGCATTAAA 33820 | | ||||| || Sbjct 225207 CAACTGCATTGAA 225195 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| ||||| ||||| ||||| || || || || |||||||||||||| | | Sbjct 224550 TTGGATAAATCAACTTCCTCCACAGTCCAGAACGAAGCTTCAGCCTTTTTATACATTTGC 224491 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || ||| |||||||||| || || || || || Sbjct 224490 CAAATATCAGGATATTGGATAGGAAAGATGACGAA 224456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629320146441360