Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq48925 609 2e-169 seq48068 109 5e-19 >seq48925 Length=1097090 Score = 609 bits (674), Expect = 2e-169 Identities = 1217/1780 (68%), Gaps = 34/1780 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||||||||| | || | ||| | || | ||| | | | |||||||||||| ||| Sbjct 839828 TCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCTGTT 839887 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | ||||| ||||||| || || |||| |||| | || |||| | | Sbjct 839888 TTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGTTCA 839947 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||||||||||| |||||||| || |||||||| || |||||| Sbjct 839948 GCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCCATT 840007 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | |||| | || ||||||||||| |||||||| | | | | |||| | Sbjct 840008 TT--AATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATATCTT 840065 Query 37028 CTGGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 ||||| | || | || |||||| |||||||| | | || |||||| |||| Sbjct 840066 TTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCATGT 840125 Query 37085 CATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | || ||| |||| ||| | | | || |||||||||| || | || |||||||| Sbjct 840126 C-TTCGTCC-CATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 37143 AAAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGAC 37200 || |||||||| || || | |||| ||| || | ||| | || | ||||||| |||| Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGT-TTGAT-GTGAACGGTTCAAAGGAC 840241 Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260 |||||||| | ||| ||||| | |||||| || || |||||||| |||| |||||| | Sbjct 840242 TCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAGAAGTGAA 840301 Query 37261 TTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320 || | | ||||||| | |||| | | ||| || | ||| | ||| | ||| ||| Sbjct 840302 TTGCGGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCAGTT 840361 Query 37321 GGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || |||||| |||||||| | || |||| || || ||| | | |||| Sbjct 840362 GGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTTCATAT 840421 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || |||| ||| | ||| || ||||| ||||| | ||||| ||| | |||||| Sbjct 840422 GTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTAATAT 840481 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 || |||||||| |||||| || | | | |||||||||| || || ||| | || | Sbjct 840482 ATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGC 840541 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 | || || ||| |||||| || || || || || |||||||| ||||| || | | Sbjct 840542 ATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACGCATG 840601 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 ||||| | | ||| |||||| ||| |||| | ||| || |||||||| || || Sbjct 840602 TTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTC 840661 Query 37621 TTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTA---TTATTA 37677 | | ||| || || | | | ||||||| || | || ||| | |||| Sbjct 840662 TGTGTGATTATCTTTGTGACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTTCATTA 840721 Query 37678 ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTA 37737 ||||| || |||| | ||| || ||| |||||| ||||||||||||||| | | | Sbjct 840722 ACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAGTG 840781 Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| | ||| || || || | |||||| || | || || || | ||| ||||||| Sbjct 840782 TATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTTGATTA 840841 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| ||||||| ||||||||||| || || || || || || ||| | ||| || Sbjct 840842 CTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTTGTGCT 840901 Query 37858 TCGATAATAGATTTCCATAAACTTCTT--GCTTTAACGATCGCTT---TAAtttttttCT 37912 || || || | ||||| | | ||||| ||| || | |||| ||| ||||| Sbjct 840902 TCTATTATTGCTTTCC--ACAGTTCTTGAGCTCGGAC--TTGCTTAACAAATCTTTTTTC 840957 Query 37913 TTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC-GCATAATCCT 37971 || ||| |||| | ||| ||| | ||| || | ||||| ||| ||| | || Sbjct 840958 CTG-TTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCA-AGACCG 841015 Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031 || || || |||||||||||| ||| ||||||||||||||| |||| ||||||| Sbjct 841016 GGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCATAAAT 841075 Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091 ||||| || | |||||| || |||||| ||| | | || ||||| || || | Sbjct 841076 AAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCCAGTA 841135 Query 38092 TTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||| || || | || ||| || || | ||||| |||||| ||||| | ||||| | Sbjct 841136 TTCTTT-TTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAATAGC 841194 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | |||||| |||| ||||| ||||| || | | ||| || |||| ||||| || | Sbjct 841195 AAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTACAC 841254 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 ||| ||||| || || | ||||| || || || |||| | ||| || ||||| || Sbjct 841255 TCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACCTTT 841314 Query 38271 AGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGC 38329 || | || | | | | || ||||| ||||| ||| |||||| ||||| || | Sbjct 841315 TGCCCTGAT-GCAATGAACATGAAGGCCTATACCACCAGCAGATTTTGAGATTAAGGCAC 841373 Query 38330 ATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAAC 38389 ||||||||| || ||| ||||||| || || || ||||| || || | || | || | Sbjct 841374 ATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGAAGC 841433 Query 38390 AACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGA 38449 || ||| | ||| || ||||||| | || |||||||| ||| ||||| | | Sbjct 841434 AAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAGTAA 841493 Query 38450 ACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAA 38509 | ||||||| || || |||| || ||||| || | ||| || || | ||||| | Sbjct 841494 AATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCGTGGA 841553 Query 38510 TACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || | || || | ||| |||||||| || |||||||| Sbjct 841554 TTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTC 841593 >seq48068 Length=254185 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| || | ||||||||| || || || ||||| || || || | |||||||||||| Sbjct 224876 ATCCCTAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGC 224817 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 |||||||||||||| || | | ||| || || || || |||||| || Sbjct 224816 GATTTGAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTC 224757 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 |||||||||||||||| ||||||||| || ||||||||||| | | |||||| || Sbjct 224756 TACTAAATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAAT 224697 Query 12070 AAAGT 12074 ||||| Sbjct 224696 AAAGT 224692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||| || || || || || | ||| || || | ||||| |||||||||||| Sbjct 225376 CCAGGCATTAAGCCGCGCTTCTTCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAG 225317 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGTTGCTAGAT 11806 ||||| |||||||| ||||| || |||| |||||| ||| | | | | ||||| | Sbjct 225316 ATTCCTTCCACAGCAGCAAAGGCAACTATTCTTTCCCCAAAGTTTGCTGTCTTGCTGGCG 225257 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCAT 11845 ||||||| ||||| || || ||||| ||||| ||| Sbjct 225256 ATCCATTGCAGTGCCCAGTCTGCCTTCTTCTTTACACAT 225218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468154741543280