Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq48925 563 1e-155 seq48068 114 2e-20 seq63168 87.8 2e-12 >seq48925 Length=1097090 Score = 563 bits (624), Expect = 1e-155 Identities = 1210/1792 (68%), Gaps = 36/1792 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | |||||| ||||| | | | || || || | |||| ||| |||||||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| | ||||| ||||||| || || ||| | ||| |||| | || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | ||| || || | ||||||||||| || || || ||||| ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 ||||| || | || || || ||| ||||||| |||||||| ||||| || |||||| Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATATC 840063 Query 65069 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 || ||| | | | |||| |||||||| ||| | || ||| |||||| || Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 || || | |||||| | | || ||||| |||| | | ||| | ||||| || || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 |||||||||||||| || | | |||||| || || ||||||| | ||||| Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTC 840243 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA-AACT-- 65302 ||||||||| || ||||| || || || || || ||||| || || | ||| || | Sbjct 840244 ATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTA---ATAGAAGTGA 840300 Query 65303 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 ||| | || || ||||| | ||||||||||| ||| ||| ||||| ||||| Sbjct 840301 ATTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCA 840358 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 65419 | || ||| | || || | || || | || |||| | Sbjct 840359 GTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACT-TCCTTC 840417 Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479 ||||||| || ||| || || | || ||||||||||| || |||||||| ||||| Sbjct 840418 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTA 840477 Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 ||| |||||||||||||| | | || || | |||||| || ||| ||||| Sbjct 840478 ATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 840537 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | || | ||| | || ||||| ||||| || |||||||| |||||||| || | Sbjct 840538 GCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACG 840597 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 | | ||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| || Sbjct 840598 CATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 840657 Query 65660 ATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT- 65717 || | || | | ||||| || || |||| || | ||| | || | |||| Sbjct 840658 GTTCTGTGTGATTATCTTTGTG-ACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 65718 -ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 |||| ||||| | ||||| |||| || || | ||||||||| || || |||| || Sbjct 840717 CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTG 840776 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| | || || ||||| | |||||| || || ||||| || | ||||| || Sbjct 840777 AAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTT 840836 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 ||||||| ||| | ||||| | ||| ||||| || ||| |||| || || ||||| | | Sbjct 840837 GATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTT 840896 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCT 65950 | | |||||| || |||||||| | || |||| ||| ||| | |||| Sbjct 840897 GTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCT 840951 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 ||||| ||| ||| | ||||||| ||| || || ||||||||| || | | Sbjct 840952 TTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAG 841011 Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070 || || || |||| |||||||| | |||| | | || | | || |||||||| Sbjct 841012 ACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCAT 841071 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 ||| | ||| || ||||| | || |||||| ||||| | || || || || || Sbjct 841072 AAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCC 841131 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||||||||||| ||||| | ||| | | || |||| | ||||| ||||| | ||| || Sbjct 841132 AGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAAT 841191 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 || | |||| || ||||| || ||||| || || | || || || || ||||| || Sbjct 841192 AGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTA 841251 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 |||||||||||||| | | |||||||| ||||| || || | || ||| | || Sbjct 841252 CACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACC 841311 Query 66311 ACTTGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 |||| | || | || ||| || ||||| || || || ||| |||||||| | Sbjct 841312 TTTTGCCCTGATGCAATGAACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAAGG 841370 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| |||||| || ||||| || ||||| || |||||||| |||| | || | Sbjct 841371 CACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGA 841430 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 | || ||| | ||| | | |||| | || ||||| || ||| || || | Sbjct 841431 AGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAG 841490 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGA 66548 |||| |||||||||| | | |||||| || ||||| ||||| || || || || | Sbjct 841491 TAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG- 841549 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 || ||||| | | ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 841550 TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAATCT 841601 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || |||||||||||||||| ||| || | |||| ||| || |||| | ||||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | |||||| ||||| || |||| || || | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 66930 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 66971 |||||||| || || || |||||| |||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACTGATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 114 bits (126), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 36423 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 36482 ||| ||||||||||||||| | ||||| || || || | ||||| || || |||| Sbjct 224871 TAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTT 224812 Query 36483 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTA 36542 ||||||| || || | || || || || || |||||| ||||||| ||| ||| Sbjct 224811 GAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTA 224752 Query 36543 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 |||| ||||| ||||| || ||| || |||||||| ||||| |||||||| ||||| Sbjct 224751 AATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAA 224694 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/222 (69%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || ||| ||| | || ||| || || || || ||||||| ||| ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || || ||||| ||||||||||| |||||||| || || ||||||| Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 36354 ||| | ||| || ||| | | ||||| || ||||| | | ||||| || Sbjct 225294 CAACTATTCTTTCCCCAAAGTTTG--CTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTC 225237 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||||||| |||||||| || | || || | ||||| || Sbjct 225236 TGCCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 >seq63168 Length=2713828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 158460 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 158519 || |||||||| ||| ||||| | || || | | ||| | || |||| |||| ||| Sbjct 1029513 CCTATGTTAGCTGAAGCGTGTAAGTCGGTAGAAATGGCTATGAAGAAATGTCCAAATGGA 1029454 Query 158520 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAAAAATAATAACGAG 158579 |||||| | ||| ||||||| ||||| |||||||| ||||||||||| | | || Sbjct 1029453 ATGTTTTCAGAAATCAAATATGATGGAGAGAGAGTGCAAGTTCATAAGAGAGGTTCGGAA 1029394 Query 158580 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 158639 ||| | |||| | || | ||||| || | | |||||||| || || |||| Sbjct 1029393 TTTAAATACTTTTCTCGAGCTTTAAAACCTGTTATGGCACATAAAGTCAATCATTTCAAG 1029334 Query 158640 GAATACATACCGAAAGCATTT 158660 ||||| | || || |||||| Sbjct 1029333 GAATATCTTCCTAAGGCATTT 1029313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657652950441080