Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18715 250 2e-61 seq48925 145 8e-30 seq61578 113 4e-20 >seq18715 Length=1377716 Score = 250 bits (276), Expect = 2e-61 Identities = 677/1018 (67%), Gaps = 40/1018 (4%) Strand=Plus/Minus Query 20341 TAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAA 20400 ||||| || |||||||||| |||||| || ||| || || || || |||| | ||| Sbjct 1370957 TAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTGCCAGTGAAT 1370898 Query 20401 GGATTATCACTATCGCTCTTC---ACACCGGTCCAACCGCGCCCGTACATTGCTACACCC 20457 ||||| | | | ||| || || |||||||| || || |||||||| ||||||||| Sbjct 1370897 GGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCC 1370838 Query 20458 AGTGCAATTTTACTTTTTGGT-ACGTGTTGCGCGAGCAACGCTTCTACGGCACGATCTGC 20516 | |||| || ||| | | ||| ||| || ||||| || || || || | Sbjct 1370837 ACCACAATCTT-CTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 1370779 Query 20517 GCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTTTGATGTCCCAGATC 20576 | ||||| ||| | ||| ||||| || || || | | | || ||||| || || Sbjct 1370778 GGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATGACCGAGGGT 1370719 Query 20577 CGTAGTGGACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATGGTATCGAGGTATTT 20636 | | |||||||| ||||| ||||| || ||| | ||| ||| ||| | |||||| Sbjct 1370718 GTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTATTT 1370659 Query 20637 TTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCGCTCGT 20696 || || ||| ||||||||||||| ||||||||| || || || || ||| || Sbjct 1370658 CTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGAAGT 1370599 Query 20697 CAACAGATAGTAACGATTGT-GATGTATGCCGA--GGGCGTCGAGCATGCCGCGAAGTTC 20753 || | | ||| || | | | | | || || ||| | ||| | || | ||| Sbjct 1370598 CAGC---TCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTC 1370542 Query 20754 ACGCAGCAGG--ATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCGACATTGGGGTTC 20811 || | | ||| || | ||| || | | ||| || | | | ||||| Sbjct 1370541 CTTCATTAATTCAACGTAAACAT--CTCCGTC-CTTAGGGCTTC--CTAGGTCAGGGTTA 1370487 Query 20812 GCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTCCACGTT 20871 || || || ||||| || || |||||||| || || || || || ||||| ||||| ||| Sbjct 1370486 GCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCAGGTT 1370427 Query 20872 TCTAGATACTCTTGGACCGAATCGATAAACGTTTGGCGCACGATCTTGTC-------GTG 20924 ||| | |||| || ||||| | || ||| | |||| || ||| Sbjct 1370426 AGAAGAAAATCTTTCACAGAATCAACGAA------GCGACCTCTCTTCTCTTTGTCGGTG 1370373 Query 20925 CATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATG 20984 | | | || || || || | ||| |||||||| ||||| || |||| | ||| || | Sbjct 1370372 AAGAAG-AAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTC 1370314 Query 20985 CGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 21044 || | || ||| | ||| || || ||||||||||||||||| ||||| ||||| Sbjct 1370313 AGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCA 1370254 Query 21045 TGCGCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACC 21102 | |||| || ||||| || ||||| | || |||||||| |||||||| | || Sbjct 1370253 --GGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACT 1370196 Query 21103 TTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGA-CACT 21161 || || || | ||||| ||| || ||||| | |||| ||||||||| || | | Sbjct 1370195 TTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCC 1370136 Query 21162 TTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATG 21221 ||| | | ||||||||||| ||||||||||| || || | |||||||||||| | ||| Sbjct 1370135 TTTAAAC-TGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATG 1370077 Query 21222 CGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTC 21281 || || || || | || || |||||| || || | | || || ||||||||||| Sbjct 1370076 CGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTC 1370017 Query 21282 GACAAAGTATGCTCCAATGATCTTGTCC-GAGCGCTTTTCGAAACGTTTATTGTTTTC 21338 |||||||| ||||| | | ||| ||| || | || || ||| | ||||| || || Sbjct 1370016 AACAAAGTACGCTCCGA-CAACTTTTCCTGAACTCTGTTTGAATGGCTTATTCTTCTC 1369960 >seq48925 Length=1097090 Score = 145 bits (160), Expect = 8e-30 Identities = 492/754 (65%), Gaps = 33/754 (4%) Strand=Plus/Plus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAAC 153128 |||| ||||| || ||||| || ||||| |||||||| | | || |||||| | Sbjct 840171 GGTTAACAACCTGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAA-C 840229 Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 |||||||| ||||| || || | |||||||| || | || || ||||| || Sbjct 840230 GGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCT 840289 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 | || | ||||| || | ||| ||||| || || ||||| | | ||||||| Sbjct 840290 AATAGAAGTGAATTGCGGAGTCCATGTTTGGCAATTTT-ATCTTTCAGAATAGACCAGTT 840348 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||| | ||| || | || ||||| || |||||||| || |||||||| || Sbjct 840349 CCAGAGATCAGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGG 840408 Query 153308 GCTACCGGCAAACGTGCTATACGG-CTCACTGTCAGACGCCAGTTTCAAACTGGCATCGA 153366 || || || | || ||||| | | || | | |||||||| ||||||| || | Sbjct 840409 ACTTCCTTCATATGTACTATAAACTCCCTCTTTTTG-CGCCAGTTCACAACTGGCTTCTA 840467 Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCA 153426 || | | ||| | |||||| | || |||| ||| ||| || || | || || Sbjct 840468 ATGCTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTT 840527 Query 153427 CGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486 | || || ||||||| | ||||||| ||| || || ||||| | ||||| ||||| | Sbjct 840528 CATATGGAATGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAG 840587 Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCA---ACAGGATAGAAATTGCGGTCGA 153543 | | || ||||| ||||| |||||||| |||| || || || ||||| || | Sbjct 840588 GTCTGTGACGCATGTTAGAATTTTTTGC---TTCAGGCACTGGGTAAAAATTAACATCAA 840644 Query 153544 TAATTTTATTTA----------AACTA--ATCACGACATGTTTCACCACAGAATGCAACA 153591 |||||||||| | | || | ||| | ||||| || || | | Sbjct 840645 TAATTTTATTAAGGTTCTGTGTGATTATCTTTGTGACTTCTTTCA--ACTTTAT---AAA 840699 Query 153592 GTTGAAAATCAAACGTTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGC 153651 |||| | | | || ||||| | | | | || | ||||| || || || || | Sbjct 840700 GTTGTATGTTTTATCTT-CATTA---ACAAACCTATTCAAAGCAATTGAAGCTAAATTAC 840755 Query 153652 AAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATT 153711 |||| ||| ||| || | | |||| || ||||| | |||||||| ||||||| Sbjct 840756 AAACAGCAACTTCATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATT 840815 Query 153712 TTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGT 153771 |||| ||| ||| ||||||| ||||| | ||||| | || || || ||||||| Sbjct 840816 TTATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGT 840875 Query 153772 ATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 |||||||||| ||||| |||| |||||| || Sbjct 840876 ATGGTGTGCCCGTTTCCACTTGTGCTTCTATTAT 840909 Score = 100 bits (110), Expect = 3e-16 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 |||| || ||||| | | ||| || ||||||| || || || || || ||||| || Sbjct 515409 ACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAG 515350 Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 ||| || || | || | ||||| | |||||| || || |||||| | ||||||||| Sbjct 515349 TCGGACAACGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATC 515291 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGG 139709 || || ||||| |||||||| ||| |||| | ||||| | ||| | ||||| | || Sbjct 515290 TGGTGGAATGCCCTCTTTGTCT-TGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGG 515232 Query 139710 GCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 || ||||| | || | || || || || | ||||||||||| || ||||| | || Sbjct 515231 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTT 515172 Query 139770 A 139770 | Sbjct 515171 A 515171 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 152757 CGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCC 152816 || ||||| ||||| || || || || || || ||| |||| | ||| | ||||| | Sbjct 839867 CGTAAATAATACATTCCTGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTC 839926 Query 152817 ATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAAT 152876 | || | || |||| || |||| | | |||||||||||||||||| || |||||| Sbjct 839927 AATTTTCCATAATTAGGTTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAAT 839986 Query 152877 GCGCCTCTATCTGCTGCCAT 152896 || ||||| || || ||||| Sbjct 839987 GCTCCTCTGTCAGCGGCCAT 840006 >seq61578 Length=3623949 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||||||||| |||||||| || | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTC--TG 3475916 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || ||| ||| || || | |||||| || || |||| ||||||||||| || || | Sbjct 3475915 ATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGG 3475856 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||||||||| |||||| ||| | | || | ||||| | ||| || | Sbjct 3475855 GGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAA 3475796 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | ||| | |||||||| ||||| || || ||||| || |||||| Sbjct 3475795 CTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 3475746 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||||| |||||||| || || ||||| |||||| Sbjct 3476202 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGA 3476143 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || || | |||||| || || |||| ||||||||||| || || || Sbjct 3476142 GAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 3476083 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| ||| | | |||| ||||| | || || || Sbjct 3476082 GATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAAC 3476023 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || || || || ||||| || |||||| Sbjct 3476022 TTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 3475974 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | ||||| || | || |||||||| |||||||| || || | Sbjct 3474210 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474151 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| ||||||| || || |||||| | ||||| | || || Sbjct 3474150 AATGTGCGTCCA-TCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGG 3474092 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | ||| | |||||| | |||||||| Sbjct 3474091 GATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 3474032 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 3474031 CTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCAT 3473984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495672190050400