Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq48925 612 3e-170 seq48068 114 2e-20 >seq48925 Length=1097090 Score = 612 bits (678), Expect = 3e-170 Identities = 1226/1794 (68%), Gaps = 40/1794 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||| ||||| | | | || || || | |||| ||| |||||||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| | ||||| |||| || || || ||| | ||| |||| | || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | ||| || || | ||||||||||| || || || ||||| ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 ||||| || | || || || ||| ||||||| |||||||| ||||| || |||||| Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATATC 840063 Query 78948 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || ||| | | | |||| |||||||| ||| | || ||| |||||| || Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 ||||| | |||||| | | || ||||| |||| | | ||| | ||||| || || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||||||||||| || | | |||||| || || | ||||| | || || Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTC 840243 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA-AACT-- 79181 ||||||||| || ||||| || || || || || ||||| || || | ||| || | Sbjct 840244 ATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTA---ATAGAAGTGA 840300 Query 79182 ATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| | || || ||| | | ||||||||||| ||| ||| | ||| |||||| Sbjct 840301 ATTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCA 840358 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTG 79297 | || || ||| | |||||||| | || || | || || | || |||| Sbjct 840359 GTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGC--AGGACTTCCTT 840416 Query 79298 TGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 ||||| |||| ||| || |||| || | ||||||||| || ||||||||||||| Sbjct 840417 CATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGT 840476 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 |||| ||||||||||| || | | || || | ||||||| || ||| ||||| Sbjct 840477 AATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAA 840536 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 | || | ||| | || ||||| ||||| || |||||||| |||||||| || | Sbjct 840537 TGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGAC 840596 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 | | |||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| | Sbjct 840597 GCATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAA 840656 Query 79538 GATTCCTGACT-ATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC 79595 | ||| || | |||| ||||| || || || | || | ||| | || | ||| Sbjct 840657 GGTTC-TGTGTGATTATCTTTGTG-ACTTCTTTCAACTTTATAAAGTTGTATGTTTTATC 840714 Query 79596 T--ATTA-CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | |||| ||||| | ||||| || | || || | ||||||||| || || |||| || Sbjct 840715 TTCATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGC 840774 Query 79653 ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTG 79712 | |||| | ||||| ||||| | ||||| || || ||||| || | ||||| Sbjct 840775 TGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTT 840834 Query 79713 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 ||||||||| ||| | ||||| | ||| ||||| || ||| | || || || ||||| | Sbjct 840835 TTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCAC 840894 Query 79773 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGACTTGTAT 79827 || | |||||| || |||||||| | || |||| ||| ||| | || Sbjct 840895 TTGTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----AT 840949 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 || ||||| ||| |||| | ||| ||| ||| || || ||||||||| ||| | Sbjct 840950 CTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCA 841009 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 | || || || || | ||||||||| | |||| | |||| | | ||| |||||| Sbjct 841010 AGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTC 841069 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 ||||| | ||| || ||||| | || ||||| ||||| | || ||| || || Sbjct 841070 ATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTG 841129 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || ||||||||||| ||||| | ||| | | || |||||| ||||| ||||| | ||| Sbjct 841130 CCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAA 841189 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 || || | ||||||||||||| || ||||| || || | || || || || ||||| Sbjct 841190 ATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTG 841249 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 || |||||||||||||| | | |||||||| ||||| || || | || ||| | Sbjct 841250 TACACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTA 841309 Query 80188 CCACTGGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || | || | || | || ||| || ||||| || || || ||| |||||||| Sbjct 841310 CCTTTTGCCCTGATGCAATGAACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAA 841368 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || ||| |||||| || ||||| || ||||| ||||||||||| |||| | || Sbjct 841369 GGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAG 841428 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || ||| | ||| | | |||| | || ||||| || ||| || || Sbjct 841429 GAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATG 841488 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 80425 ||||| |||||||||| | | |||||| || ||||| ||||| || || || || Sbjct 841489 AGTAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACC 841548 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 | || ||||| | || ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 841549 G-TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAATCT 841601 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || |||||||| ||||||| ||| || | |||| ||| || |||| | |||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 ||||| | |||||| ||||| || |||| || || | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 80850 |||||||| || || || |||||| |||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACTGATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||| ||| || || ||| || || || || ||||||| ||| ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || || ||||| |||||||||||||||||||| || || ||||||| Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 |||| | ||| || ||| || | |||||| || ||||| | | ||||| || Sbjct 225294 CAACTATTCTTTCCCCA-AAGT-TTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTC 225237 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||||||| |||||||| || | ||||| | ||||| || Sbjct 225236 TGCCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717701484366680