Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48925 605 4e-168 seq48068 105 9e-18 >seq48925 Length=1097090 Score = 605 bits (670), Expect = 4e-168 Identities = 1217/1788 (68%), Gaps = 28/1788 (2%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCC 70850 ||||| | ||| |||||||| | | | || |||||| | |||| ||| ||||| || Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTA-TGCGTAAATAATACATTCC 839883 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 |||||| ||||| | ||||| ||||||| || || ||| | ||| ||| |||| Sbjct 839884 TGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGG 839943 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | ||||| || | ||| |||||||| || || || ||||| ||||| || || Sbjct 839944 TTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGC 840003 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 71029 |||||| || | || || || ||| ||||||| |||||||| ||||| || ||||| Sbjct 840004 CATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATAT 840062 Query 71030 CTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 ||| ||| | | | |||| |||||||| ||| | || ||| ||| || | Sbjct 840063 CTTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCA 840122 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | ||||| | |||||| | | || ||||| |||| | | |||| | ||||| || | Sbjct 840123 TGTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCT 840182 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | |||||||||||||| || | | |||||| || || ||||||| | |||| Sbjct 840183 GGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACT 840242 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||||||||| || ||||| || || || || || ||||| || || | | || || Sbjct 840243 CATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAGAAGTGAAT 840302 Query 71267 TTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 | | || |||||| | || ||||||||||| ||| ||| ||||| ||||| | Sbjct 840303 TGCGGAGTCCATGT--TTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCAGT 840360 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA--TCCTGCA 71382 ||| ||||| | || || | || |||| || Sbjct 840361 TGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGC--AGGACTTCCTTCA 840418 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 |||||| || ||| ||||||| || ||||||||||| || ||||||||||| ||| Sbjct 840419 TATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTAA 840478 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || ||||||||||| || | | || || | |||||| || ||| ||||| Sbjct 840479 TATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATG 840538 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | || | ||| | || ||||| ||||| || |||||||| ||||||||||| | | Sbjct 840539 CGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACGC 840598 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | |||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| || Sbjct 840599 ATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGG 840658 Query 71623 TTTCTGACT-ATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT- 71679 || ||| | |||| ||||| || || || | || | ||| | || | |||| Sbjct 840659 TT-CTGTGTGATTATCTTTGTG-ACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 71680 -ATTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 |||| ||||| ||||| |||| || || | ||||||||| || || |||| || Sbjct 840717 CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTG 840776 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | |||| | |||||| ||||| | |||||| || || ||||| || | ||||| || Sbjct 840777 AAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTT 840836 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 ||||||| ||| | ||||| | ||| ||||| || || | || || || ||||| | | Sbjct 840837 GATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTT 840896 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT 71917 | | |||||| || |||||||| | || |||| | | || |||| |||| Sbjct 840897 GTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAAATCTTTTTT 840956 Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977 | ||| |||| | ||| ||| ||| || || ||||||||| || | | || | Sbjct 840957 CCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAGACCGG 841016 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | || |||| |||||||| | |||| | |||| | | ||| ||||||||||| | Sbjct 841017 GGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCATAAATA 841076 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 ||| || ||||| | || ||||| ||||| | || ||| || || || |||| Sbjct 841077 AATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCCAGTAT 841136 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 ||||||| ||||| | ||| | | || |||||| ||||| ||||| | ||| || || | Sbjct 841137 TCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAATAGCAA 841196 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 ||||||| ||||| || ||||| || || | || || || || ||||| || |||| Sbjct 841197 ATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTACACTC 841256 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 |||||||||| | | |||||||| | ||||| || || | || ||| | || | | Sbjct 841257 TCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACCTTTTG 841316 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | | || | || | ||| || ||||| || || || ||| |||||||| || || Sbjct 841317 CCCTGATGCAATG-AACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAAGGCACA 841374 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | |||||| || ||||| || ||||| || |||||||| |||| | || || || Sbjct 841375 TTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGAAGCA 841434 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 ||| | ||| | | |||| | || ||||| || ||| || || ||||| Sbjct 841435 AGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAGTAAA 841494 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTA 72514 |||||||||| | | |||||| || ||||| ||||| || || || || | || | Sbjct 841495 ATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG-TGGA 841553 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 |||| | || ||| ||||| | ||||||||||||||||||| | |||| Sbjct 841554 TTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAATCT 841601 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || |||||||| ||||||| ||| || | |||| ||| || ||||| | |||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | |||||| ||||| || ||||||| || | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 72933 |||||||| || || || |||||| |||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACTGATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 105 bits (116), Expect = 9e-18 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||| ||| | || ||| || || || || ||||||| ||| ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || || ||||| |||||||||||||||||||| || || ||||||| Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 ||| | ||| || ||| | | ||||| || ||||| | | ||||| || Sbjct 225294 CAACTATTCTTTCCCCAAAGTTTG--CTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTC 225237 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||||| |||||||| || | ||||| | ||||| || Sbjct 225236 TGCCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670609109092120