Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18715 259 5e-64 seq48925 145 8e-30 seq61578 98.7 1e-15 seq26895 86.0 6e-12 >seq18715 Length=1377716 Score = 259 bits (286), Expect = 5e-64 Identities = 678/1012 (67%), Gaps = 28/1012 (3%) Strand=Plus/Minus Query 18946 TAATCGACCACACCGTTTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCAAAT 19005 ||||| || ||||||| || |||||| || ||| || || || || |||| | ||| Sbjct 1370957 TAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTGCCAGTGAAT 1370898 Query 19006 GGATTATCACTATCGCTCTTT---ACCCCAGTCCAACCGCGCCCGTACATTGCTACACCC 19062 ||||| | | | ||| || ||||| ||||| || || |||||||| ||||||||| Sbjct 1370897 GGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCC 1370838 Query 19063 AGTGCAATTTTGCTTGTCGGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGC 19121 | |||| || ||| | | ||| ||| |||||||| | || || || | Sbjct 1370837 ACCACAATCTT-CTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 1370779 Query 19122 GCAATAAGGTTCGTCGGGTTTCCATGCAGGTGCAAACAAAGCGGTTT--GATGTCCTAAA 19179 | ||||| ||| | ||| ||||| ||||| || | ||||||| | |||| || | Sbjct 1370778 GGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTA--AAGCGGTGTCTGATGACCGAGG 1370721 Query 19180 TCCGTCAT-AGACCAGGCTCCTTTAAAATCGTACGACATTAAAAATATGGTGTCGAGGTA 19238 ||||| ||||||||| ||||||||||| || ||| | || ||| || | ||| Sbjct 1370720 GT-GTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTA 1370662 Query 19239 TTTTTGCGCTTCAGTGTAATAGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACT 19298 ||| || || || |||||| |||||| ||||||||| || || || || || Sbjct 1370661 TTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGA 1370602 Query 19299 CGTCAACAGATAGTAACGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAAGTTC 19358 |||| | || | | | | | | ||| ||| | ||| | || | ||| Sbjct 1370601 AGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTC 1370542 Query 19359 ACGCAGCAGG--ATCGTGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGGGTTC 19416 || | | ||| || | || || | | ||| || | | || ||||| Sbjct 1370541 CTTCATTAATTCAACGTAAACATCTCCG--TC-CTTAGGGCTTC--CTAGGTCAGGGTTA 1370487 Query 19417 GCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTCCACGTT 19476 || || || ||||| || || |||||||||||||| || || |||||||| ||||| ||| Sbjct 1370486 GCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCAGGTT 1370427 Query 19477 TCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCTCTTGTCG-TGCATAT 19534 ||| | |||| || ||||| | || || | | | | || |||||| || | | Sbjct 1370426 AGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCT-TTGTCGGTGAAGAA 1370368 Query 19535 GGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATGAGGGT 19594 | | || || || | ||| |||||||| ||||| |||||||| | ||| || | ||| Sbjct 1370367 GA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCAGGCC 1370309 Query 19595 TCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGC 19654 | || |||| | ||| || || ||||||||||||||||| ||||| ||||| | Sbjct 1370308 TGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCA--GGA 1370251 Query 19655 TGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTTGAA 19712 |||| || || || || ||||| | || ||||| || |||||||| | |||||||| Sbjct 1370250 AGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTTTGAA 1370191 Query 19713 GTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTTGAG 19772 || | || ||| || || ||||| | |||| ||||||||| || || | Sbjct 1370190 ATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCCTTTAA 1370131 Query 19773 GGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGACAA 19832 || |||||||||||||| ||||| || || | |||||||||||| | ||||| || Sbjct 1370130 ACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCGTCAG 1370071 Query 19833 GTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGACAAA 19892 || || | || || |||||| || || | || || || ||||||||||| ||||| Sbjct 1370070 ATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCAACAAA 1370011 Query 19893 GTATGCACCTATGATCTTGTCC-GAGCGCTTTTCGAACCGTTTATTGTTTTC 19943 ||| || || | | ||| ||| || | || || ||| | ||||| || || Sbjct 1370010 GTACGCTCCGA-CAACTTTTCCTGAACTCTGTTTGAATGGCTTATTCTTCTC 1369960 >seq48925 Length=1097090 Score = 145 bits (160), Expect = 8e-30 Identities = 710/1113 (64%), Gaps = 40/1113 (4%) Strand=Plus/Plus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTC-TCAAAAACAAATTACTGTGAAAC 156550 |||| ||||| || ||||| || ||||||||||||| | || || |||| ||| Sbjct 840171 GGTTAACAACCTGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTG-AAC 840229 Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610 |||||||| ||||| || || | |||||||| || | || || ||||| || Sbjct 840230 GGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCT 840289 Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT-TTTCAACTGTGACCAGTC 156669 | || | |||||| || | ||| | ||| | | ||||| ||||| ||||||| Sbjct 840290 AATAGAAGTGAATTGCGGAGTCCAT-GTTTGGCAATTTTATCTTTCAGAATAGACCAGTT 840348 Query 156670 CCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 156729 ||| | ||| || ||| ||||| || |||||||| || |||| ||| || Sbjct 840349 CCAGAGATCAGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGG 840408 Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT---GCCAGTTCGTAACTGGCCTC 156786 || || || | || |||||| ||| || | | |||||||| ||||||| || Sbjct 840409 ACTTCCTTCATATGTACTATAA-ACTCCCT--CTTTTTGCGCCAGTTCACAACTGGCTTC 840465 Query 156787 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 156846 | || | | ||| | ||||| ||||||| || | | || || | || || Sbjct 840466 TAATGCTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACT 840525 Query 156847 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGAT 156906 | || || ||||||| | ||||||| ||| || || ||||| | ||||| || || Sbjct 840526 TTCATATGGAATGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTAT 840585 Query 156907 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 156963 || | || ||||| ||||| |||||||| |||| | ||||| ||||| ||| Sbjct 840586 AGGTCTGTGACGCATGTTAGAATTTTTTGC---TTCAGGCACTGGGTAAAAATTAACATC 840642 Query 156964 AATAATTTTATTCAAACTAT---CCACTACATGTTTGACCACAGTGTGCAATAGTTGAAA 157020 |||||||||||| | | | | || | | |||| | | ||| | ||| Sbjct 840643 AATAATTTTATTAAGGTTCTGTGTGATTATCTTTGTGACTTC---TTTCAACTTTATAAA 840699 Query 157021 ATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATAC 157077 | | | |||| | ||| | | | |||| | ||||| || |||| |||||| || Sbjct 840700 GTTGTATGTTTTATCTTCATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAAC 840759 Query 157078 GGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 157137 ||| ||| || | | |||| || ||||| | |||||||| ||||||||||| Sbjct 840760 AGCAACTTCATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTAT 840819 Query 157138 CAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGG 157197 || ||| ||||||| ||||| | || || | || || || | |||||| || Sbjct 840820 GGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGG 840879 Query 157198 TGTGCCGGTTTCGGCTTGAATTTCTATGAT---GTTGCGCATTAATGTAACCGCGGGCAT 157254 |||||| ||||| |||| |||||| || || | || | | | | | ||| | Sbjct 840880 TGTGCCCGTTTCCACTTGTGCTTCTATTATTGCTTTCCACAGTTCT-TGAGCTCGG--AC 840936 Query 157255 TTGCTCGCGAAACTGGCCTTTATCC---TCGTAATGTTTGTACCAGTATTCAAAGTCATC 157311 ||||| ||| | ||| ||| || || | || ||| | |||||| || || Sbjct 840937 TTGCTTAACAAA---TCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTC 840993 Query 157312 ACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTT 157371 || | ||| || || || || | ||||||||||| ||| || | | Sbjct 840994 TCCCCAACAATCAGCAAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATC 841053 Query 157372 TTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGC 157431 || ||| || ||||||||||||| ||| || | |||||| |||| | || || | || Sbjct 841054 TTTTTCTACACGTTTCATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGC 841113 Query 157432 TTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATG 157491 | | ||||| ||||| | || || | ||||| || | || || | || Sbjct 841114 TCGGACCTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTG 841173 Query 157492 CCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCG---CTTGCCACCTTGATCCACGTG 157548 ||| ||||||| ||| | || ||||| ||| ||||| ||||| || || | Sbjct 841174 CCAAGGTTCAAGGTAAATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATA 841233 Query 157549 ACGCACCATATTATTAAAAACTCGCAGCATTGG 157581 | | ||||||| | |||| || |||||| Sbjct 841234 CCTGGCTGTATTATTGTACACTCTCAACATTGG 841266 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 |||| |||||||| | | ||| || || |||| ||| ||||| || || |||||||| Sbjct 515409 ACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAG 515350 Query 143012 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 ||| || || | || | ||||| | ||||| || || |||||| | ||||||||| Sbjct 515349 TCGGACAACGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATC 515291 Query 143071 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGG 143130 || || ||||| |||||||| |||||| ||||| | ||| | ||||| | || Sbjct 515290 TGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGC 515231 Query 143131 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 ||| || || | || | || || || || | ||||||||||| || ||||| | ||| Sbjct 515230 TTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTA 515171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 156177 TGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACG 156236 |||| ||||| ||||| || ||||| || || ||||| |||| | ||| | ||||| Sbjct 839865 TGCGTAAATAATACATTCCTGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACG 839924 Query 156237 CCATTTTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAA 156296 || ||| || |||| | |||| | | ||| |||||||||||||| || |||| Sbjct 839925 TCAATTTTCCATAATTAGGTTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAA 839984 Query 156297 ATGCTCCCCTGTCTGCTGCCATTTCAAT 156324 ||||||| ||||| || ||||||| ||| Sbjct 839985 ATGCTCCTCTGTCAGCGGCCATTTTAAT 840012 >seq61578 Length=3623949 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || || | ||| || |||||||| ||||| || || | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTC--TG 3475916 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| ||| || || | ||||| || || |||| ||||||||||| || || | Sbjct 3475915 ATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGG 3475856 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| ||||| ||| | | || | ||||| | |||||| | Sbjct 3475855 GGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAA 3475796 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | |||||||| ||||| || || ||||| || |||||| Sbjct 3475795 CTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 3475746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| ||||| || || || |||||||||||| Sbjct 3476202 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGA 3476143 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || || | ||||| || || |||| ||||||||||| || || || Sbjct 3476142 GAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 3476083 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | |||| ||||| | ||||| || Sbjct 3476082 GATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAAC 3476023 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||||| || || || || || ||||| || |||||| Sbjct 3476022 TTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 3475974 >seq26895 Length=1000185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 60450 |||||||||||||| | || |||||||| | ||| || |||||||| || ||||| | Sbjct 288919 GCTTCAATGTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATG-CTC 288861 Query 60451 CTACCCG-TCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAA 60509 || | | | || ||||| || | || || || || || || || || |||| ||||| Sbjct 288860 CTGCTTGTTGGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAA 288801 Query 60510 TTCGTGTACGTGAAAACCGTG 60530 ||||| || ||||||||||| Sbjct 288800 CTCGTGCACATGAAAACCGTG 288780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506613941013840