Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46792 145 1e-29 seq48925 141 1e-28 seq61242 120 4e-22 >seq46792 Length=1178884 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 |||||| | ||||||||||| ||||||| ||||||| || ||||| | |||||| Sbjct 183301 AATCCAGCCGATAGGAGGATGATAATGTGTGCATGGAACCCATCAGATCTTAGTCAAATG 183360 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 ||| |||| || || || ||| | | ||||| | | ||||| |||||| ||| Sbjct 183361 GCATTACCTCCTTGCCATTGTCTTGTCCAGTTCCATGTGGCTGATGGAAAATTGAACTGC 183420 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 ||||||||||| || ||||| |||||||| || ||||| || ||||| ||||| |||||| Sbjct 183421 TTAATGTATCAAAGAAGTGCAGACATGGGACTGGGTGTGCCGTTTAATATTGCCAGCTAT 183480 Query 70373 TCTATGTTGACGCACATGATTGCTCACATTACCGG 70407 || | ||||| || ||||| || || |||| || Sbjct 183481 TCACTTTTGACACATATGATAGCACATGTTACAGG 183515 >seq48925 Length=1097090 Score = 141 bits (156), Expect = 1e-28 Identities = 313/464 (67%), Gaps = 4/464 (1%) Strand=Plus/Minus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || |||||||| || | || | ||| | || || ||| ||| || ||||||||| Sbjct 840288 GCTCCAATGCCCACAGCGTCTACAGCACAAATCTTAGGAAATAATGAGTCCTTTGAACCG 840229 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 ||||| |||||||| ||||| ||||| ||||||||| || || | ||| Sbjct 840228 TTCACATCAAACATTTACCAAAGACGTGTTTTGTCTGGAGAATTCCAGGTTGTTAACCAT 840169 Query 97920 CACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATC 97979 || || | ||||||| || | || | ||| |||| |||||| | |||| Sbjct 840168 CATTTATTGAGAGACTTAACACAGGCAGATTTATGGGACGAAGACATGAAGAATCTGATA 840109 Query 97980 ATGTACAACAATGGGTCCATTCAAAACATT-ACCATCATCCCGGAAGAGTTGCGCAGA-A 98037 || |||||||||| ||||||||||| ||| | | | || || |||| | | ||| Sbjct 840108 ATACACAACAATGGTTCCATTCAAAATATTGAGCGT-ATACCAAAAGATATTAG-AGAGT 840051 Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 | || || || || ||||||||| | || || || | ||||| || ||||||| Sbjct 840050 TGTATAAAACAGTTTGGGAGATTTCAGTTAAAACAACAATTAAAATGGCCGCTGACAGAG 839991 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | | || ||||| ||||||||||| || | | || || || || | || | Sbjct 839990 GAGCATTTATAGACCAAAGTCAATCGTTTAACATTCATGTGGCTGAACCTAATTATGGAA 839931 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| ||||| ||||||||||||||||| | ||| || || || || ||||| ||| Sbjct 839930 AATTGACGTCGATTCACTTTTACGCATGGAAAATGGGTCTGAAAACAGGAATGTATTATT 839871 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | | | |||| | ||| | ||||| || | || || || ||| Sbjct 839870 TACGCATAAAGCCTGCCGCTAATGCAATTCAGTTCACAGTTGAC 839827 Score = 141 bits (156), Expect = 1e-28 Identities = 335/503 (67%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT---GTCACGATACGTTACAC 96876 ||| |||||| ||||||||| | ||| |||||||| ||| | || | || || | Sbjct 841280 CCAATGGCCTCGTGCCAATGTTGAGAGTGTACAAT--AATACAGCCAGG-TATGTCGACC 841224 Query 96877 AGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACG 96936 | || ||||||||||| || || || | || | ||| | |||||||||||| | || | Sbjct 841223 AAGGAGGCAATAAACGACCGGGAGCATTTGCTATTTACCTTGAACCTTGGCACTCTGATG 841164 Query 96937 TTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACT 96996 ||||||| ||| | || || || || ||||| ||||||| ||||| || || | Sbjct 841163 TTTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAGGTCCGAGCTAGAGAAT 841104 Query 96997 TGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACT 97056 | ||||| || | ||| | |||||||| || ||||| || || | | | || | Sbjct 841103 TATTTTACGCCTTATGGATCCCAGATTTATTTATGAAACGTGTAGAAAAAGATGAAATGT 841044 Query 97057 GGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTG 97116 |||| |||||||| || | | |||||||| | ||||| ||||| ||||| |||| Sbjct 841043 GGAGTCTAATGTGTCCTCATGATTGCCCCGGTCTTGCTGATTGTTGGGGAGAAGAATTTG 840984 Query 97117 AGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAG 97176 | || ||| || || || || ||| || | | |||| || | || Sbjct 840983 AAGCATTGTATGAAAAATATGAACAGGAAAAAAGATTTGTTAAGCAAGTCCGAGCTCAAG 840924 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 |||||||||| || || | || || || || || || || || ||||| || || | Sbjct 840923 AACTGTGGAAAGCAATAATAGAAGCACAAGTGGAAACGGGCACACCATACATGCTGTATA 840864 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 | ||| | ||| | || || || ||| | | |||||||| || || ||| Sbjct 840863 AAGATTCATGTAATAGAAAAAGTAATCAAAAAAATCTTGGCACCATAAAATGCAGTAATT 840804 Query 97297 TGTGCACGGAAATTGTAGAGTAC 97319 ||||||| |||||||| || ||| Sbjct 840803 TGTGCACCGAAATTGTGGAATAC 840781 >seq61242 Length=1475702 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| |||| ||||| || || |||| || |||||||| || ||||| ||||| |||| Sbjct 333602 TACCAAGTCGTATGCCACTAGGGTTGAGTGCACTCTTGTCACCAGGTACGGTGTTCTTGT 333543 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 |||| ||||| ||||||| ||||||||||| || || | || || ||||| | | Sbjct 333542 TGCAGGCGATGCTGCACAACTCGAGGATGCGTTCAGCGCGCGCACCACTCAGTCCAGCGC 333483 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTC 126925 | |||| || ||||| | |||||| ||||| ||||| || || | || | || || | Sbjct 333482 TCCGCATGTCAACTAGCACCAGATGTACATCAGTACCACCGGTAGCGATGTCATAACCAC 333423 Query 126926 GTGAAACGAGTCCCTCTGCCAACAACTGTGCATT 126959 |||| | || ||||| ||| || |||||| Sbjct 333422 GTGACATCAGACCCTCACATAACCGCTTTGCATT 333389 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||| |||| || | ||||| | |||| ||||| | || ||||||| || Sbjct 332701 TGCGCCATATCAGCCAGCAAATATGAGCCATTTTCATCAGCAATTTGTCTGAATCGTTTA 332642 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || ||||| | |||| ||||||||| | || ||||| |||| | ||| ||||||| Sbjct 332641 TAATCCAAACAACGAGAGTAGCAACTGATACCAGCTATTATTAAACGAGGCTTGAATAAC 332582 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCT 127396 || ||| | || || | ||| | || || | | ||||| | ||||||||||| Sbjct 332581 TTTGCAGTTTCTGCCAACTTGTCGTAATCTATTAAGCCAGTTTTAGGATCCACCT 332527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740473883654120