Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq48925 113 3e-20 seq26895 100 2e-16 >seq48925 Length=1097090 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || || ||||| || || || || || |||||||| ||| | | | | Sbjct 515391 CTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGTACGTCCA 515332 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 |||||||| |||||||| ||| | ||||| | ||| || || |||||| || |||||| Sbjct 515331 TCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTG 515272 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| |||||| |||| || || || ||| || ||||| || || Sbjct 515271 TCTTGAATTTTCGCT-TTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTAT 515213 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || || |||||||| || || ||||| Sbjct 515212 GGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq26895 Length=1000185 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 91635 AATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGATCGTGTCC 91694 ||| || || | ||||||||||| || || || || || ||||| || || || Sbjct 288914 AATGTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTT 288855 Query 91695 GGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCGAACTCGTG 91754 | |||| || || || |||| |||||||||||||| || || |||| || |||||||| Sbjct 288854 GTTGGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTG 288795 Query 91755 CACATGAAAACCGTGTAAACCCT 91777 |||||||||||||||| ||||| Sbjct 288794 CACATGAAAACCGTGTTTACCCT 288772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361900288853967