Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq18715 262 3e-65 seq9460 149 5e-31 seq26895 95.1 1e-14 seq61578 91.5 1e-13 seq48925 87.8 1e-12 >seq18715 Length=1377716 Score = 262 bits (290), Expect = 3e-65 Identities = 663/996 (67%), Gaps = 33/996 (3%) Strand=Plus/Minus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||| ||| | |||| | |||||| || || ||||||| |||||| || | || || || Sbjct 1370976 TTCATTTGCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCC 1370917 Query 100369 GGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCG 100428 | || |||| ||||| |||| | || ||| || || ||||| || || Sbjct 1370916 AGTCGCGTTGCCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCG 1370857 Query 100429 GCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA 100488 |||||||| || || ||||| | ||| || |||| ||||| || | ||||| Sbjct 1370856 TCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGA---GCAAGCAA 1370800 Query 100489 ---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAG 100545 |||||| | || ||| | || || || ||||||||| || ||||| || Sbjct 1370799 ATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAG 1370740 Query 100546 AGTGGTTTGGTAGCCCAAATCGGTGT---TTGACCAGGCGCCTTTAAAATCGTAGCTCAT 100602 | || || | || | ||||| | |||||||||||||||||||| || ||||| Sbjct 1370739 CGGTGTCTGATGACCGAG---GGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCAT 1370683 Query 100603 AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTC 100662 || || || | ||| | || || || || ||| | ||||| ||| || || Sbjct 1370682 GAGGAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATC 1370623 Query 100663 ATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTG--CAGTTGTAGC 100720 | || | ||| || ||| |||| |||||| | || || || | ||| || Sbjct 1370622 CCATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAA--AGG 1370565 Query 100721 TGGTCCAGCATCGCGCGCAATTCCTTCAGTAA---AATGTTGTACGTGTCGGCGTCGCGC 100777 | || || ||| | ||||||||||||| ||| || || || | || |||| | Sbjct 1370564 TCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAA-ACATCTC--CGTC---C 1370511 Query 100778 TCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTC 100836 | | | || || ||| ||||| || || || ||||| || || ||||| || || || Sbjct 1370510 TTAGGGCTTCCTAG-GTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATC 1370452 Query 100837 CACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCG 100896 || ||||| || |||||||| | | ||| || || || || || || || ||| Sbjct 1370451 AACACCGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAA---GCG 1370395 Query 100897 CCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGAT 100953 | | | | | | | || |||| |||| || |||| | |||||||| ||||| Sbjct 1370394 ACCTCTCTTCTCTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGAT 1370335 Query 100954 GGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATT 101013 ||| || |||||||| || | || |||| | ||| | ||| |||||||| || || Sbjct 1370334 GGAAGGTAGAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTT 1370275 Query 101014 GCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCA 101073 ||| ||||| || || ||||| | |||| ||||| || || || || | |||||||| Sbjct 1370274 GCCTTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCA 1370215 Query 101074 GGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTC 101133 || |||||||| | |||||||||||| || || |||| || || || || |||| Sbjct 1370214 CGGGTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTG 1370155 Query 101134 AAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTAT 101193 |||||||| || || | |||||||| ||||||||| |||||||| || || Sbjct 1370154 GAAACTGCCTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAAT 1370095 Query 101194 GAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCG 101253 ||| |||||||| ||||||| ||||| || | ||| || || || || || || | Sbjct 1370094 GAAACCGTACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCT 1370035 Query 101254 GCCGTACACGCCCCACTCTACAAAATACGCAGCGAC 101289 ||| || ||||| || ||||| ||||| |||| Sbjct 1370034 TGGGTAAACACCCCATTCAACAAAGTACGCTCCGAC 1369999 >seq9460 Length=1391182 Score = 149 bits (164), Expect = 5e-31 Identities = 221/308 (72%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 24831 TGTTTTTTGGTTGTGTCGCGAATTGCACACGATTCGGTCACGACCTTTTGTACATAATCG 24890 |||| ||||| ||| || || | || || | || | || || |||||||| || ||| Sbjct 539177 TGTTCTTTGG--GTGCCGAGA-TGGCGCAGGCCTCCGACATCACTTTTTGTACGTAGTCG 539121 Query 24891 CGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCAC 24950 ||||| || || || | ||||| |||||||| ||||||| ||||||| || | |||| Sbjct 539120 CGGCCTTTCACCAGCTGAACGTAAGCGCAGCGGTCGAACCAGCGCGCGTGCTGCTCCCAC 539061 Query 24951 GGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTG 25010 || |||| || | |||||||| | | |||||||||||||| || ||||| |||| Sbjct 539060 GGGACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCGCAGTAGAAGCATTTCGTTTTG 539001 Query 25011 TCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTTTCGGG---CCGTTGCTTC 25067 |||| |||||||||| |||||||| || || || || | || || | || || | Sbjct 539000 TCGCCGTGGCCGGTGTAGAAGAAGCCGGCCTCCGCCAGCTCCTCTGGTTTCTGTCGCAT- 538942 Query 25068 AAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTTCTATCGCATATTTGGGG 25127 ||||| ||||| ||| | || ||||| | |||||| || || || ||| |||| Sbjct 538941 GCACCGC--GGCCAGTCTTTGAAGGTGCGGAGACGCGCCGCCTCGGAGGCGTATCGGGGG 538884 Query 25128 TGCGCGGG 25135 ||| |||| Sbjct 538883 TGCACGGG 538876 Score = 114 bits (126), Expect = 1e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 25232 CAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTC 25291 || ||| ||||| ||||| ||||| || || || ||| |||||||||||| || | Sbjct 538764 CAGAAAGGGGCACTGCGGGGCCCACCGCTGGTGGTCCTTAGCGGGGTCGTCGCCCTCCAC 538705 Query 25292 CCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTA 25351 ||||||||| || || ||||| ||||| |||||||| || ||||||||||| || | ||| Sbjct 538704 CCAGCGCATGATTTCGACTTTACAAAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTA 538645 Query 25352 GTAGAACCCATTGGCGGCCATTTG-TCGCGGCGACATAAATTCTACCGTCCAATT 25405 |||||| || ||| || | || ||| ||||| | ||| || || | ||| || Sbjct 538644 GTAGAAGCCGTTGCGCGCTAGCTGCTCG-GGCGAAAGAAAGTCCACGGGCCACTT 538591 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 24675 CGGCATATGGGGCAATTGGTCAATGATGACGCGCACTTGCCGCACGCTACCACATGCCCG 24734 ||||| || ||||| ||| | || |||||||||| ||||||| ||||| |||||| Sbjct 539369 CGGCACATCGGGCACTTGTCCGTCGACAGCGCGCACTTGGCGCACGCCACCACGTGCCCG 539310 Query 24735 CACGGCACGAAGCACACGATTTTTTCATCGTAATAGCAAATCTTGCAAAGCTT 24787 |||||||||||||||||| | || || ||||| |||||||| ||||| Sbjct 539309 CACGGCACGAAGCACACGTTGCGCTCCTCCGCGTAGCATATCTTGCACAGCTT 539257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 24888 TCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGC 24947 ||| ||||||| ||||| || | |||| ||||| || |||||| ||||||| | | Sbjct 463520 TCGTGGCCCTTCACAAGCAGCAGGTATCCGCAGTGCGGGAACCAGTGCGCGTGCTCCGAC 463461 Query 24948 CACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAGTAAAAACA 25000 |||||| | ||| | |||||| || ||||||| ||||||||||| ||||| Sbjct 463460 CACGGCGCATCACCCGCCTCCCACTTCCCCAAACCACCGTCGCAGTAGAAACA 463408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 24888 TCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGC 24947 ||| ||||||| ||||| || | |||| ||||| || |||||| ||||||| | | Sbjct 464129 TCGTGGCCCTTCACAAGCAGCAGGTATCCGCAGTGCGGGAACCAGTGCGCGTGCTCCGAC 464070 Query 24948 CACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAGTAAAAACA 25000 |||||| | ||| | |||||| || ||||||| ||||||||||| ||||| Sbjct 464069 CACGGCGCATCACCCGCCTCCCACTTCCCCAAACCACCGTCGCAGTAGAAACA 464017 >seq26895 Length=1000185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGCGT 21200 |||||| || ||||||||||| ||| | ||||||| ||| ||||| || | || | | Sbjct 288911 GTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTT 288852 Query 21201 AGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAAC 21260 ||||||||||| | || || || ||||| || || || |||| || |||||||| || Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 21261 GTGAAAGCCGTG 21272 ||||| ||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq61578 Length=3623949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || |||||||| | | ||| | ||||| Sbjct 3476184 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCCTC 3476125 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||| || || | ||||| | ||||| || ||| | || |||||||| Sbjct 3476124 CAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTG 3476065 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | ||| || ||| || ||||| ||| ||||| || Sbjct 3476064 GATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTCTT 3476005 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| || || ||||| Sbjct 3476004 TCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 >seq48925 Length=1097090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || |||||||| | ||| ||||||| ||| | || || ||||| || || ||||| || Sbjct 515406 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 515347 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || || | || || | |||||| || || | || | ||| |||||||| Sbjct 515346 GACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGT 515287 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TC 18990 || | |||||||||||| ||||||| |||||| | ||| ||| || |||| || Sbjct 515286 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTC-AGAGGCTTC 515228 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||||||||| || | ||||| || || || |||||| Sbjct 515227 AACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414253540984678