Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq18715 248 7e-61 seq9460 122 7e-23 seq26895 104 2e-17 >seq18715 Length=1377716 Score = 248 bits (274), Expect = 7e-61 Identities = 648/974 (67%), Gaps = 21/974 (2%) Strand=Plus/Minus Query 101009 ATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTG 101068 |||| | |||||| || || ||||||| ||||||||| | || || || | || || Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 101069 CCTGTGAAATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATG 101128 || ||||| |||| | || ||| || || ||||| || || |||||||| Sbjct 1370906 CCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATA 1370847 Query 101129 GCAACGCCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACA 101185 || || ||||| | ||| || |||| ||||| || | ||| | ||| ||| Sbjct 1370846 GCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGA---GCAAGCAAATATTTCACA 1370790 Query 101186 GCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGA 101245 | | || ||| | || || || ||||||||| || ||||| || | || ||| Sbjct 1370789 CCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGA 1370730 Query 101246 TAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTA 101305 | || || | || ||||| |||||||| ||||| || |||||||| || || | | Sbjct 1370729 TGACCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGA 1370670 Query 101306 TCGAGGAACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTA 101365 || | | | || || || ||| | || || ||| || || || | |||| Sbjct 1370669 TCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTA 1370610 Query 101366 ATTGCACTTGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAAC-TCGTCCAGCATTGC 101424 || || || | |||||| | || || || | | | || |||| || |||| | Sbjct 1370609 ATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCT-CTTCAGAAAGGTCGTTCAACATTTC 1370551 Query 101425 GCGCAATTCTTTCAGTAAAATGTTGTACGTGT-CAGCGTCGCGTTCTTTGT--TGCCGAG 101481 |||||||| |||| ||| || |||| || | || ||| ||| | | || || Sbjct 1370550 ACGCAATTCCTTCATTAA----TTCAACGTAAACATC-TC-CGTCCTTAGGGCTTCCTAG 1370497 Query 101482 TGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAA 101541 ||||| || || ||||| || || || ||||||||||| || || ||||| || || Sbjct 1370496 GTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAA 1370437 Query 101542 TTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGC-GT 101600 ||||| | | ||| ||||| |||||||| || || || | | || || || Sbjct 1370436 CTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTC-TCTTCTCTTTGT 1370378 Query 101601 CG-TGCATATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTA 101659 || || | | | |||| || |||| | |||||||| |||||||| || | ||||||| Sbjct 1370377 CGGTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTA 1370319 Query 101660 AGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCG 101719 || | || |||| |||| | ||| ||||||||||||||||||||||| || || Sbjct 1370318 AGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCA 1370259 Query 101720 TTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCA 101779 ||||| | ||| | || ||||| || || || | |||||||| || ||||| |||| | Sbjct 1370258 TTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAA 1370199 Query 101780 ACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATG 101839 ||||| |||||| ||||| ||| || ||||| | |||| ||||| || || Sbjct 1370198 ACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATC 1370139 Query 101840 GTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAA 101899 || | |||||| | ||| ||||| || ||||| || ||||| |||||||| | | Sbjct 1370138 TCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGA 1370079 Query 101900 TGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCAT 101959 || | || || || | ||| || || || || || || | || || |||||| Sbjct 1370078 TGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCAT 1370019 Query 101960 TCTACAAAATACGC 101973 || ||||| ||||| Sbjct 1370018 TCAACAAAGTACGC 1370005 >seq9460 Length=1391182 Score = 122 bits (134), Expect = 7e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 23537 TTGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGC 23596 ||| ||||||||| ||| || || ||| | ||||| | |||||| || ||||| || || Sbjct 539133 TTGTACGTAGTCGCGGCCTTTCACCAGCTGAACGTAAGCGCAGCGGTCGAACCAGCGCGC 539074 Query 23597 GTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAA 23656 ||| | |||||||| ||||| | | |||||||| ||||||||||||||||| | || Sbjct 539073 GTGCTGCTCCCACGGGACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCGCAGTAGAA 539014 Query 23657 ACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGG 23716 ||||| |||| || | ||||||||| | || ||||| || || | | |||||| Sbjct 539013 GCATTTCGTTTTGTCGCCGTGGCCGGTGTAGAAGAAGCCGGCCTCCGCCAGCTCCTCTGG 538954 Query 23717 CTTTTGT 23723 || ||| Sbjct 538953 TTTCTGT 538947 Score = 105 bits (116), Expect = 6e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23888 CACAAACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCCTCCAA 23947 || ||| ||||||||||| ||||| || | || || || ||||| |||||||||| Sbjct 538764 CAGAAAGGGGCACTGCGGGGCCCACCGCTGGTGGTCCTTAGCGGGGTCGTCGCCCTCCAC 538705 Query 23948 CCAGCGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTCCGAGCGCCTCAAATA 24007 ||||||||| ||||| ||||| ||||| |||||||| |||||||| ||| | | || Sbjct 538704 CCAGCGCATGATTTCGACTTTACAAAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTA 538645 Query 24008 GTAAAACCCGTTG 24020 ||| || |||||| Sbjct 538644 GTAGAAGCCGTTG 538632 >seq26895 Length=1000185 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 22348 CACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCACGTCGGCAGGCGAG 22407 ||||||||||| |||||||| ||||| |||| | ||||| ||||| || ||||| | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 22408 CACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGGAGCGTCACGTCGGC 22467 ||||||||||| | | | | | |||||||| || |||| || | ||||||||||||| Sbjct 288840 CACTTTAACCCCAACAAGCAGGAGCATGGCGCCCCCAACGCCGCTGTGCGTCACGTCGGC 288899 Query 22468 GATTTGGGCAAC 22479 || | |||||| Sbjct 288900 GACCTCGGCAAC 288911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419264079437547