Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq18715 257 1e-63 >seq18715 Length=1377716 Score = 257 bits (284), Expect = 1e-63 Identities = 785/1201 (65%), Gaps = 37/1201 (3%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 |||||||| || |||||||||||| ||| ||| |||| || || || | || Sbjct 1370008 TACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTACCGATTCCT 1370067 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 || || |||||||||||||| || || | ||| | ||||| || || || || ||||| Sbjct 1370068 AATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAACGAC 1370127 Query 30352 AGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAG 30411 || |||||| | | || || | ||| | ||| ||| ||| || || || Sbjct 1370128 AGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAA 1370187 Query 30412 GATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTG 30471 ||||| ||||| | |||||||| |||| ||||||||| || ||||| || ||| || Sbjct 1370188 GATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGACTG 1370247 Query 30472 GGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACAC 30531 | ||| | || || || ||||| || ||||| || |||||| | | ||| | | Sbjct 1370248 TCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACAAGCC 1370307 Query 30532 AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTTT 30591 | || || |||| ||| |||| || || || || ||||| ||| ||| || ||||| Sbjct 1370308 AGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCTTCTTC 1370367 Query 30592 AAATTGAGTTCTGCCGAAAATC-GCGCCGTT--TTCGTTGAGTCCGCACGAGAGTATTTG 30648 || | | | | || | | | || |||||||| || | ||| | | | Sbjct 1370368 TTCTTCA---CCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGATTTTCTT 1370424 Query 30649 CGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGT 30708 | || ||||| || || ||||| | || ||||| ||||| || || |||||||| || Sbjct 1370425 CTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAGGGA 1370484 Query 30709 GCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAAA 30768 ||||| || || ||||| || ||||| |||| || || | ||| |||| Sbjct 1370485 GCTAACCCTGACCTAGGAAGCCCT---AAGGACGGAGATGTTTACGTTGAATTAATGAAG 1370541 Query 30769 GAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACC 30828 || | | |||||| | ||||| |||||| |||| || || || |||||| |||| || Sbjct 1370542 GAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGACT 1370601 Query 30829 TCGGCGATTAGCGCGGGGTACGATAAAATCTCTA-TAGTTAATTATGAAAATGCGCAAGA 30887 || || ||||| || || | ||||| || || | | || |||| | || || | Sbjct 1370602 TCCGCTATTAGTGCTGGATGGGATAAGAT-TCAAGTGGTCGATTACAGCGAGGCTCAGAA 1370660 Query 30888 GTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTA---ACAC 30944 || | ||||||||||| | |||| || |||||||||||||| ||||||| |||| Sbjct 1370661 ATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGTCTAATGACAC 1370720 Query 30945 GGACTTGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATATAC 31004 | | || |||| || | ||||| | || |||||||| | | |||| ||||| Sbjct 1370721 ---CCTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGGAAACTTATAC 1370777 Query 31005 TGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTGCT 31064 | || | | || | ||| | ||| |||||| |||||| || ||| | Sbjct 1370778 CACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTCAACCCTAAGAAGATTGTGGT 1370837 Query 31065 AGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAATCC 31124 | ||| || ||||||||| |||| ||||| || || || || |||| |||||||| Sbjct 1370838 GGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGTTCACAACTACGAAAATAACAATCC 1370897 Query 31125 CTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGATTA 31184 || || || || || || | ||||| |||||| || || || || ||||| Sbjct 1370898 ATTCACTGGCAACGCGACTGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGATTA 1370957 Query 31185 CAAAG-------ATTTGATA---CAAAGGTACACCGACACTT--ATTATGACTCTGTAGC 31232 | || | ||| | | | || | | | || |||| || || || Sbjct 1370958 TAGAGAAATAGCAAATGAAATCGCTATGGGCAAATGGGAGTTCCATTACGATAACGTTGC 1371017 Query 31233 GCAAGCGGCATATGCGTTCGCAGAGAATG-TTGGTGATCTACTTACTTACGATAA---CC 31288 |||| | |||| |||| | | | | ||||| ||| | || |||||||| || Sbjct 1371018 TGAAGCTCCTTATGTGTTC-CGGCCATCGACCGGTGACCTAATAACGTACGATAATCCCC 1371076 Query 31289 CAACGAGTGTGCAAGCTAAGGGAAAGTTTGTAATAGACAACAATTTGGGTGGTTTGTTTG 31348 | ||| | | || || || |||| ||||| | |||| || |||| |||||||| | Sbjct 1371077 GATCGACTAT---TGCGAAAGGCAAGTATGTAAGAAACAATAAGCTGGGCGGTTTGTTCG 1371133 Query 31349 CGTGGGAACTGGACGCCGACAATGGCGACATTCTTAACAGCATGAACGAGGGTTTAGGTA 31408 ||||||| | || || |||||||| || | | ||| ||||||| |||| | || | Sbjct 1371134 CGTGGGAGATTGATGCAGACAATGGTGAACTATTAAACGCCATGAACATGGGTCTCGGAA 1371193 Query 31409 A 31409 | Sbjct 1371194 A 1371194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420926798005187