Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq41860 122 5e-23 seq55153 120 2e-22 seq63183 118 6e-22 seq31607 118 6e-22 seq14856 118 6e-22 seq59004 116 2e-21 seq14022 114 7e-21 seq61578 113 2e-20 seq12408 102 4e-17 seq10364 95.1 6e-15 >seq41860 Length=1186899 Score = 122 bits (134), Expect = 5e-23 Identities = 89/103 (86%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||||| | |||||||| | |||||||||||| |||||||||| |||||||| Sbjct 214948 AAATATAGGTTAAATAAAAATGTGTTATTGGCCCATGAGGGGATCGAACCCGCGACCTTC 215007 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 215008 GCGTTATTAGCACGACGTTCTAACCAACTGAGCTAATGGGCCG 215050 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 87830 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 87889 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| || Sbjct 87890 TGAGCTAATGGGCCGTTGA 87908 Score = 116 bits (128), Expect = 2e-21 Identities = 82/95 (86%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || ||||||| ||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 75361 AACAAAAAATAAAAACGTATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 75420 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 75421 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 75455 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 282216 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 282275 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 282276 ACTGAGCTAATGGGCC 282291 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 286838 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 286897 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 286898 CTGAGCTAATGGGCCG 286913 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 947162 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 947221 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 947222 CTGAGCTAATGGGCC 947236 >seq55153 Length=611338 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 57561 AAAAAAGAAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 57619 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| |||||||||||||||||||||| || Sbjct 57620 CTCTAACCAACTGAGCTAATGGGCCGTTGA 57649 Score = 118 bits (130), Expect = 6e-22 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || ||||| || || ||||||||| |||||||||| |||||||||||||| Sbjct 58447 AGAATGAACAAAAAGATTTCAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 58389 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||||| |||||||||||||||||||||| || Sbjct 58388 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGTTGA 58348 >seq63183 Length=5450840 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || || ||||||| |||||||||||| |||||||||| ||||||||||||||||| Sbjct 4075045 AAATAGTAAAAAAG---ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 4074989 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 4074988 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 4074956 >seq31607 Length=613 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 181 AAAAATGTAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 239 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 240 CTCTAACCAACTGAGCTAATGGGCCG 265 >seq14856 Length=886910 Score = 118 bits (130), Expect = 6e-22 Identities = 85/97 (88%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 11437 AATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||| ||||| |||||||||| |||||||||| ||||||||||||||| Sbjct 44640 AATTACAAAAAGGAATCA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 44696 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||| |||||||||||||||||||||| Sbjct 44697 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 44733 >seq59004 Length=4551303 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3161709 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3161650 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 3161649 TGAGCTAATGGGCCGT 3161634 >seq14022 Length=299639 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 148453 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 148394 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 148393 TGAGCTAATGGGCCG 148379 >seq61578 Length=3623949 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2621733 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2621792 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2621793 TGAGCTAATGGGCC 2621806 >seq12408 Length=703 Score = 102 bits (112), Expect = 4e-17 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 5 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGG 64 Query 11528 CCG 11530 ||| Sbjct 65 CCG 67 >seq10364 Length=496 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 GAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 59 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261289827833212