Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48925 140 3e-28 seq61578 129 5e-25 >seq48925 Length=1097090 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | | |||||||||||| | || |||||||| || | ||| || ||| | Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| || | |||||| ||| | ||||| ||||||||||||||||| ||| Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| || || || ||| |||||||| | || || Sbjct 515283 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 515224 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| |||||||| || || || ||||| || ||||||||||| Sbjct 515223 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq61578 Length=3623949 Score = 129 bits (142), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | |||||| ||||| || | ||| |||||| | ||||| || |||| Sbjct 3476184 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG--AGAGTGTACGACCATCC 3476127 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| ||| | ||||| | | |||||| ||||| || |||||||||||||| Sbjct 3476126 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCT 3476067 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||||| || || ||| | | |||||| | | || || || | |||||||| Sbjct 3476066 TGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTC 3476007 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||| || || ||||||||||| Sbjct 3476006 TTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 118 bits (130), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || || || ||||| | |||||| || | ||||||| || ||||| Sbjct 3475955 ACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTC--TGATAGTGTACGACCATCCT 3475898 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| |||||| ||| | ||||| | | |||||| ||||| || |||||||||||||| | Sbjct 3475897 CCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTT 3475838 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| || || ||| ||| |||||| | | | || || || | || || || | Sbjct 3475837 GGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCT 3475778 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | || || || ||||||||||| Sbjct 3475777 TGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| ||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 3474367 ATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 3474308 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | ||||| | | | || || || | ||||| Sbjct 3474307 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGAT 3474248 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| | || || |||||||||||||| Sbjct 3474247 GGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| ||| | ||||| ||||||||||| ||||| || || || || || Sbjct 3474595 ATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTT 3474536 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | ||||| | | | || || || | ||||| Sbjct 3474535 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGAT 3474476 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | || || |||||||||||||| Sbjct 3474475 GGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447937122799320