Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq54512 592 2e-165 >seq54512 Length=2028860 Score = 592 bits (656), Expect = 2e-165 Identities = 414/470 (88%), Gaps = 11/470 (2%) Strand=Plus/Plus Query 15491 ATTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTT 15550 || ||||||||||||||| || ||| || ||||||| | |||||||||||| || || Sbjct 888372 ATATTTTGGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTT 888431 Query 15551 AACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAG 15610 | | ||||||||||||||| |||||||||||||||| || ||||||||||||||||| Sbjct 888432 GAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCATAAGCGGTTGATTCGTTCGAG 888491 Query 15611 AGATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTT 15670 ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| Sbjct 888492 AGATATCGTGAACGAAAGAAACCCGAAAAAGT-GTTTTTTCGGGATTACTCCGAAATTTG 888550 Query 15671 CGGTTCGATCAATTAAAACCTGAAAATAACTTA-TGAGGATGATAAAACTGCGTCGAATG 15729 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 888551 TGGTTCGATCAATTAAAATTGCAAAATTACTTAATGAGGATGATAAAACTGCGTCGAATG 888610 Query 15730 GCACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCA 15789 | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 888611 CCGCCAACCGCGTGAAAATCGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCA 888670 Query 15790 AAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGGAGAGCTCAAATGCATTA 15849 |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 888671 AAAACAGTGTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAAATGCATAG 888730 Query 15850 AAATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACATAAATTATATTTTGTGCTT 15909 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 888731 AAATATTATTTCTTTGAACTCAGCGAGCTCAAAATATCACATAAATTATATTTTG----- 888785 Query 15910 AAAAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCAGGAATAGAA 15959 | |||||||| |||||||||||||||| || |||||||||| ||| Sbjct 888786 ----AGCTCAAAAACGTCATAAGTACAATTTTAAGAGCCCAGGAATGGAA 888831 Score = 260 bits (288), Expect = 1e-65 Identities = 248/313 (79%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 1252 TCAAAAACTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAG 1311 ||||||||||||| || || | | |||||| || | |||||||||| ||| || | Sbjct 888412 TCAAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAT 888471 Query 1312 AATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGttttttt 1371 || |||||||| |||||| |||||||||| ||||| ||| | |||||||||||||| Sbjct 888472 AAGCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAACCCGAAAAAGTGTTTTTTC 888531 Query 1372 GTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTT 1431 | || ||| ||||||| ||| |||||| ||| || | |||||| ||| ||| | Sbjct 888532 GGGATTACTCCGAAATTTGTGGTTCGATCAATTAAAATTGCAAAATTACTTAATGAGGAT 888591 Query 1432 CA-AAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAGTTA 1490 | ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct 888592 GATAAAACTGCGTCGAATGCCGCCAACCGCGTGAAAATCGGTTGATCCATTCAAAAGTTA 888651 Query 1491 TTGCCGTTTGAAAATTCAAAAAATTGTG-TCT-TTAAACTGCTATTAGAGTTTTGAGCTC 1548 |||| |||||||||||| ||||| ||| ||| | ||||| |||| ||| ||| ||||| Sbjct 888652 TTGCGGTTTGAAAATTCCAAAAACAGTGTTCTATGAAACTTCTATCAGACTTTCGAGCTG 888711 Query 1549 GAAGAGCTCAAAT 1561 | ||||||||||| Sbjct 888712 GGAGAGCTCAAAT 888724 Score = 87.8 bits (96), Expect = 2e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1626 AATGAGCGGGAGGTTGCAGAGATGGCCTTTAGGGTGAACCGTTTTTCTAAtttttttt 1683 ||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 888830 AATTAGCGGGAAGTTGCAGGGATGGCCTTTAAGGTGAACCGTTTTTCTAATTTTTTTT 888887 Score = 86.0 bits (94), Expect = 6e-13 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 2 TAGCGGGAAGTTGCACGGATGGCCTTTAGGGTGAACCGTTTTTCTAATTTTT 53 ||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 888833 TAGCGGGAAGTTGCAGGGATGGCCTTTAAGGTGAACCGTTTTTCTAATTTTT 888884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50913175653682