Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq54512 318 2e-82 >seq54512 Length=2028860 Score = 318 bits (352), Expect = 2e-82 Identities = 279/345 (81%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| |||||||| |||| || | ||||||||||| || || | || Sbjct 888379 GGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGCTTG 888438 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | ||||| | ||||||||||||||| ||| |||| Sbjct 888439 AAAAACCACGTCGATCGCCACCAAGCTGGTCATAAGCGGTTGATTCGTTCGAGAGATATC 888498 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| |||||||| |||||||||||| |||||||||||||| ||||||| Sbjct 888499 GTGAACGAAAGAAACCCGAAAAA-GTGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 888557 Query 40310 ATCAAATTGAACTTAAAGATTTTTTA-TGAGGCTTAAAAAATTGCGTTGAATGTCACCAA 40368 ||||| | || | || ||| ||| ||||| | | |||| ||||| ||||| | |||| Sbjct 888558 ATCAATTAAAATTGCAAAATTACTTAATGAGGATGATAAAACTGCGTCGAATGCCGCCAA 888617 Query 40369 CCGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAG 40428 |||||| ||||||| | || ||||||||||||| |||||||||||||| ||||| || Sbjct 888618 CCGCGTGAAAATCGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAACAG 888677 Query 40429 TGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 |||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 888678 TGTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 888722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132812270062290