Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq54512 607 1e-169 seq20554 102 1e-17 seq55600 96.9 4e-16 seq61571 82.4 1e-11 >seq54512 Length=2028860 Score = 607 bits (672), Expect = 1e-169 Identities = 446/526 (85%), Gaps = 11/526 (2%) Strand=Plus/Minus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 888887 AAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTGCAACTTCCCGCTAATTCC 888828 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATATA 9621 |||||||||| || ||||||||||||||||| |||||||| | ||||||||| Sbjct 888827 ATTCCTGGGCTCTTAAAATTGTACTTATGACGTTTTTGAGCT---------CAAAATATA 888777 Query 9622 ATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAGC 9681 ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| Sbjct 888776 ATTTATGTGATATTTTGAGCTCGCTGAGTTCAAAGAAATAATATTTCTATGCATTTGAGC 888717 Query 9682 TCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATTTTCAAAC 9741 ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 888716 TCTCCCAGCTCGAAAGTCTGATAGAAGTTTCATAGAACACTGTTTTTGGAATTTTCAAAC 888657 Query 9742 CGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGGTGCCATTCGACGCAGTT 9801 |||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||| Sbjct 888656 CGCAATAACTTTTGAATGGATCAACCGATTTTCACGCGGTTGGCGGCATTCGACGCAGTT 888597 Query 9802 TTATCATCCTCA-TAAGTTATTTTCAGGTTTTAATTGATCGAACCGAAAATTTCGGAGTA 9860 |||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 888596 TTATCATCCTCATTAAGTAATTTTGCAATTTTAATTGATCGAACCACAAATTTCGGAGTA 888537 Query 9861 ATCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCTCTCGAACGAATCAA 9920 |||||| |||||||||||||||||||||||||||| Sbjct 888536 ATCCCG-AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAA 888478 Query 9921 CCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATTAGT 9980 ||| || |||||||||||||||| ||||||||||||||| | | || || ||||||| Sbjct 888477 CCGCTTATGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGT 888418 Query 9981 TTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCAAAAAAT 10026 ||||| | ||||||| || ||| |||||||||||||||||| || Sbjct 888417 TTTTGAAGTTGATCGATAAAGCCGGTTAAAAGTTATTCCAAAATAT 888372 >seq20554 Length=203 Score = 102 bits (112), Expect = 1e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16793 TTATGAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAG 16852 || ||| | |||| ||| || | |||||||| ||| ||| ||||||| ||||| |||| Sbjct 55 TTCTGAAAAACGTCTTTCATCGAGTAGAAAAAGATAAAAAAATTTCAGCGAAATCTAAAG 114 Query 16853 GGGTCAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTAT 16901 |||| ||| ||||||||||||||||| || |||||| |||| ||| ||| Sbjct 115 GGGTAAGGTTCAAAAGTGGTCGATTTAGCATGGAATACCCCATATTTAT 163 Score = 100 bits (110), Expect = 4e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 15288 AAGATATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGAT 15347 || ||| ||||||| |||||| || ||||| ||||||||||| ||| |||||||| ||| Sbjct 166 AAAATAAATATGGGGTATTCCATGCTAAATCGACCACTTTTGAACCTTACCCCTTTAGAT 107 Query 15348 TTGGCTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAACGTCTCTCATAAT 15400 || ||||||| ||| ||| |||||||| | || ||| |||| | ||| ||| Sbjct 106 TTCGCTGAAATTTTTTTATCTTTTTCTACTCGATGAAAGACGTTTTTCAGAAT 54 >seq55600 Length=923629 Score = 96.9 bits (106), Expect = 4e-16 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 16793 TTATGAGAGACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAG 16852 || ||| | |||| ||| || | |||||||| ||| ||| |||||| ||||| |||| Sbjct 283524 TTCTGAAAAACGTCTTTCATCGAGTAGAAAAAGATAAAAAAAATTCAGCGAAATCTAAAG 283583 Query 16853 GGGTCAGGGTCAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 |||| ||| |||||||||||| ||||||| |||||| |||| ||| || Sbjct 283584 GGGTAAGGTTCAAAAGTGGTCAATTTGGCATGGAATACCCCATATCTA 283631 Score = 95.1 bits (104), Expect = 2e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355 ||||||| |||||| ||||||| ||||||||||| ||| |||||||| ||||| ||||| Sbjct 283627 TATGGGGTATTCCATGCCAAATTGACCACTTTTGAACCTTACCCCTTTAGATTTCGCTGA 283568 Query 15356 AAGTTTACCATCCTTTTCTACCCTATCAAAAACGTCTCTCATAAT 15400 | ||| ||| |||||||| | || ||| |||| | ||| ||| Sbjct 283567 ATTTTTTTTATCTTTTTCTACTCGATGAAAGACGTTTTTCAGAAT 283523 >seq61571 Length=580 Score = 82.4 bits (90), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 16814 GGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTC 16873 || ||||||| ||| | ||| ||||||| |||||||| ||||||||| |||| | ||| Sbjct 84 GGTTAGAAAAAGATTGAAAATTTTCAGCGAAATCAAA-GGGGTCAGGAAAAAAATTTGTC 142 Query 16874 GATTTGGCGTGGAATGCCCCCTATGTA 16900 |||||| | ||||||| ||||||| || Sbjct 143 GATTTGACATGGAATGACCCCTATATA 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64464867552960