Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq48068 98.7 1e-15 seq18997 87.8 2e-12 seq63168 82.4 8e-11 >seq48068 Length=254185 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||| ||||| |||| |||||| || || || |||||||| ||||| | ||||| || Sbjct 224845 TACATCTCAGAGTGTACATTTTCCATAGCGATTTGAAATCCATAAAAGAACCTTGCTTCA 224786 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 |||||| || ||||||| | | || || ||||||||||| |||||| Sbjct 224785 CCGATTTGAACTTCTTGTGAAAATCGCTCTACTAAATTCTCATTTACTATACCATCAGAA 224726 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || |||||||||||||| | || ||| ||||| | | || || |||| ||| | Sbjct 224725 GCAGCAAAAAATGCCAACACATGTTTAATAAAGTGCCTCTCACAGTCCTTTAAACTTTCC 224666 Query 21950 CAATCTAATAAA 21961 |||||| ||||| Sbjct 224665 CAATCTGATAAA 224654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATT 21178 ||| | | |||||| || |||||||||| ||| |||||||| | | || ||||| | Sbjct 226978 ATAATAACTTAAAACTCTGCATCTAATGTGAATACATTATCCATTCTGTTGGACATCACC 226919 Query 21179 CCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 ||| || || || || | ||| | || || || || |||||||| || || |||||| Sbjct 226918 CCCCACTTCTGGTACTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTGCCCTCTAATGAT 226859 Query 21239 AT-AGATTCCATAAAATCAAATGGATT 21264 || |||||| || || ||||||||||| Sbjct 226858 ATCAGATTC-ATGAAGTCAAATGGATT 226833 >seq18997 Length=881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATT 21178 ||| | | |||||| || |||||||||| ||| |||||||| | | || ||||| | Sbjct 46 ATAATAACTTAAAACTCTGCATCTAATGTGAATACATTATCCATTCTGTTGGACATCACC 105 Query 21179 CCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 ||| || || || || | ||| | || || || || |||||||| || || |||||| Sbjct 106 CCCCACTTCTGGTACTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTACCCTCTAATGAT 165 Query 21239 AT-AGATTCCATAAAATCAAATGGATT 21264 || |||||| || || ||||||||||| Sbjct 166 ATTAGATTC-ATGAAGTCAAATGGATT 191 >seq63168 Length=2713828 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 131879 CCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGATAAATATAAAGATGGA 131938 |||||||| ||||| | || | || |||||| || || | |||| | | ||||| Sbjct 1029513 CCTATGTTAGCTGAAGCGTGTAAGTCGGTAGAAATGGCTATGAAGAAATGTCCAAATGGA 1029454 Query 131939 ATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCATAAAAAAGATAATGTA 131998 |||| |||||| | ||||||||||| ||| | || ||| ||||||| | || | | | Sbjct 1029453 ATGTTTTCAGAAATCAAATATGATGGAGAGAGAGTGCAAGTTCATAAGAGAGGTTCGGAA 1029394 Query 131999 TACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAAA 132043 | || || ||| | || ||||||||||||| | | |||||| Sbjct 1029393 TTTAAATACTTTTCTCGAGCTTTAAAACCTGTTATGGCACATAAA 1029349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531480684801880