Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq18715 369 4e-97 seq63174 102 8e-17 seq26895 91.5 1e-13 seq61578 84.2 2e-11 >seq18715 Length=1377716 Score = 369 bits (408), Expect = 4e-97 Identities = 824/1222 (67%), Gaps = 40/1222 (3%) Strand=Plus/Plus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 ||||| || | || || ||||| |||||||| ||||| || ||||| || || || ||| Sbjct 1369993 AAAGTTGTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGAT 1370052 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || || || | ||||||||| ||||| || | || || || |||||||| ||||| ||| Sbjct 1370053 CGTGTACCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGC 1370112 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 |||||||| ||||||||| | ||| || || ||||| |||||||||| || || Sbjct 1370113 GACGGCATCAACGACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1370172 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || || || || || ||||| || ||||| ||||||||||| || | ||||| Sbjct 1370173 TGCAGCGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAG 1370232 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 ||||| || | | | | ||||| |||||||||||||| || |||||||| ||||| Sbjct 1370233 CCACAGAAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATG 1370292 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 | ||||| || | ||| | ||||| | ||||||| || || |||||||| | Sbjct 1370293 TCTCTCAAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTT 1370352 Query 62399 TCCGATCCGTTCTTTTATTTTCACGATGTGGCCAAACGCAAGA------TTTTTGTCGAT 62452 ||||||| ||||| | | ||||| | |||| |||| || || ||| Sbjct 1370353 GCCGATCCCTTCTTCT-TCTTCAC-----CGACAAAGAGAAGAGAGGTCGCTTCGTTGAT 1370406 Query 62453 TCCGTCATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAG 62512 || || | ||| ||| | | |||||||| || ||||| ||||| || ||||||||||| Sbjct 1370407 TCTGTGAAAGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAA 1370466 Query 62513 TTTCCCGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACG 62572 || || ||||| || || || || || || ||| || | | | | || || || | | Sbjct 1370467 TTCCCTGGCGGTAAGGGAGCTAACCCTGACCTAG--GAAGCCCTAAG-GA-CG-GAGATG 1370521 Query 62573 TACACGAT--TCTGTTGAGAGATTTACGCGAAGCCCT---CGACCGTCTCTCAATCGAAA 62627 | ||| | | ||| || || || ||| | ||||| | ||| || || | Sbjct 1370522 TTTACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACC-TTTCTGAA--GAGA 1370578 Query 62628 CGAATCGAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAG 62687 | | | ||||| ||||| ||| || || || || || || ||| || | Sbjct 1370579 CCGGTAAGAAATACGAGCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGG 1370638 Query 62688 TCGATTACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCA 62747 ||||||||| || || || ||||| ||||| | ||||| | |||| || ||||| | Sbjct 1370639 TCGATTACAGCGAGGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTA 1370698 Query 62748 AAGGAGCTTGGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTA 62807 |||| || ||||| ||| | | || |||| || | || ||||| ||| | | | Sbjct 1370699 AAGGCGCCTGGTCTAATGACACCCTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGA 1370758 Query 62808 ACCCTAAAGAGCATTATACGACCGATTTTGCCGTTCGTGCTATGCTCAAGCAAAAAGTCG 62867 |||| || || |||||| || || |||| || | |||| ||| ||| Sbjct 1370759 ACCCCAAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTCA 1370818 Query 62868 AAAACAAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTG 62927 | || |||||| | || || || || |||||||| ||||| |||||||| || | Sbjct 1370819 ACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGT---TC 1370875 Query 62928 ACTTTGTCGACGAAAAT---AATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTA 62984 || | |||||||| |||||||| | |||| || | ||||| ||||||||| Sbjct 1370876 AC---AACTACGAAAATAACAATCCATTCACTGGCAACGCGACTGGACCTGTCAAAGGTA 1370932 Query 62985 CCTGGGAGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTT---TGTGGGTAAAG 63041 | ||| | ||||| || || ||||||||||| || ||| | | |||| || Sbjct 1370933 CTTGGCAAGACGGTGTAGTTGATTATAGAGAAATAGCAAATGAAATCGCTATGGGCAA-- 1370990 Query 63042 ACGGCATTAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACGCGACCG 63101 | || | | | ||||||| | | || |||| | || || || |||||| Sbjct 1370991 ATGGGAGT-TCCATTACGATAACGTTGCTGAAGCTCCTTATGTGTTCCGGCCATCGACCG 1371049 Query 63102 GCGATCTCATAACCTACGACAGTCCTCAGTCGGTTCTGGATAAAGCAAAATATGTTTTGG 63161 | || || ||||| ||||| | ||| | ||| | | | |||| || ||||| Sbjct 1371050 GTGACCTAATAACGTACGATAATCCCCGATCGACTATTGCGAAAGGCAAGTATGTAAGAA 1371109 Query 63162 ACTATAATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAA 63221 || |||| ||||| ||| |||||||||||||||| ||||| ||||| || || ||| Sbjct 1371110 ACAATAAGCTGGGCGGTTTGTTCGCGTGGGAGATTGATGCAGACAATGGTGAACTATTAA 1371169 Query 63222 ACGCAATGAACAGCGGTCTCGG 63243 |||| ||||||| |||||||| Sbjct 1371170 ACGCCATGAACATGGGTCTCGG 1371191 >seq63174 Length=598887 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| |||||||| || ||||||||||| || | ||| | ||| || || || || | Sbjct 163865 AAACTCATGATGATCTGTGGAATGCTGCGCAACTGCAGTTGGTCAAAGAAGGCAAGATGC 163806 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | || | | | |||||||| |||| || || ||||| || ||||| | |||||||||| Sbjct 163805 ATGGCTTCATGCGCATGTATTGGGGAAAGAAAATTCTAGAATGGACGCCAACTCCCGAGG 163746 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | || || | ||| | || || |||| ||| |||||| | || || | ||||||| Sbjct 163745 ATGCTCTTAAATATGCAATACATTTAAATGATCATTACAGTATAGATGGCAGAGATCCTA 163686 Query 71850 ACGGTTATG 71858 | || |||| Sbjct 163685 ATGGATATG 163677 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| ||||||||||| |||||| | || || | |||||| ||| || || || || | Sbjct 160083 AAACTCATGATGAACTGTGGAATTCAGCACAACTACAGCTGGTCAAAGAAGGCAAGATGC 160024 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | || | ||| || ||||| ||| ||| |||||||| || ||||| | | ||| || Sbjct 160023 ATGGCTTCCTTCGTATGTATTGGTGCAAGAAGATTCTAGAATGGACGCCGAGTCCAGAAG 159964 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | || || | ||||| || ||| |||| ||| |||||| | || || | ||||| | Sbjct 159963 ATGCACTTCAATATTCAATATATTTAAATGATCATTACAGTATAGATGGCAGAGATCCAA 159904 Query 71850 ACGGTTATGTCGGT 71863 ||| | ||| ||| Sbjct 159903 GCGGATTTGTTGGT 159890 >seq26895 Length=1000185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 115204 CACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCTGCAGGCGAG 115263 ||||| |||||||| ||||| || || |||| | || || ||||| |||||||| | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 115264 CATTTTAACCCTACGAACATGGCTCACGGTGCGCCCAACTCTGCCGTTCGTCACGTCGGT 115323 || |||||||| | || || || || || |||||| | || || ||||||||||| Sbjct 288840 CACTTTAACCCCAACAAGCAGGAGCATGGCGCCCCCAACGCCGCTGTGCGTCACGTCGGC 288899 Query 115324 GATCTTGGCAATATTGATGC 115343 || || ||||| ||||| || Sbjct 288900 GACCTCGGCAACATTGAAGC 288919 >seq61578 Length=3623949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | || ||| ||||| | ||| | Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || ||| || || ||||||||||| || || || || || Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3475866 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 ||| | || || | || ||||||||| | || |||| | | | || ||| ||||||| Sbjct 3475867 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCA--GACTATA 3475924 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| |||||||| || || |||| |||| || Sbjct 3475925 ACATCCAAAAAGAGTCGACACTCCACTTGGTACT 3475958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478284334486640