Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq18715 286 3e-72 seq26895 116 3e-21 seq48925 107 2e-18 seq9460 82.4 6e-11 >seq18715 Length=1377716 Score = 286 bits (316), Expect = 3e-72 Identities = 546/795 (69%), Gaps = 17/795 (2%) Strand=Plus/Plus Query 32171 GTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTG 32230 |||| ||||| ||||| |||||||| || ||| | || |||||| | || || Sbjct 1369999 GTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTA 1370058 Query 32231 CCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGA 32290 ||| | || ||| || ||||||| |||||||| || |||||||||||||| |||||||| Sbjct 1370059 CCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGC 1370118 Query 32291 CTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCA 32348 | ||||| | | ||| || | || |||||||| | || || ||||| || |||| Sbjct 1370119 ATCAACGA--CAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCA 1370176 Query 32349 AAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGC 32408 ||||||| ||| || || ||| | ||||||||||| |||||||| | || || || | Sbjct 1370177 GCGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCAC 1370236 Query 32409 AGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGG 32468 ||||||| ||||| | ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 1370237 AGAAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTC 1370296 Query 32469 CCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGG 32528 ||| || | ||| | | |||||| |||| || || || || ||||| | | | Sbjct 1370297 TCAAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCG 1370356 Query 32529 ATCCCTTTTATTTTATGCA-CGACGCGGA-AAAACGGCACGTGTTTGTCGATTCCGTCAA 32586 ||||||| | | || | || |||| || || | | || || || ||||| || || Sbjct 1370357 ATCCCTTCT-TCTTCTTCACCGACAAAGAGAAGAGAGGTCG-CTTCGTTGATTCTGTGAA 1370414 Query 32587 AGAGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGG 32646 ||| ||| | | ||||| ||||| ||||| || || || |||||||| ||||| || Sbjct 1370415 AGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGG 1370474 Query 32647 CGGCAAAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTAT 32706 ||| || || || ||||| | || || | | || |||| | ||| || Sbjct 1370475 CGGTAAGGGAGCTAACCCTGACCTAGGAAGCCCTAAG---GACGGAGATGTTTACGTTGA 1370531 Query 32707 TTTGTTACAAGAATTGCGTTCTATGCTGGACGACCTTCAATTGCAAACGGGCAAAACGTA 32766 || | | ||||||||| ||| || |||||||| | || || || | || Sbjct 1370532 ATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATA 1370591 Query 32767 CGAGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGC 32826 |||| ||||| ||| |||||||| || || || ||| ||||| | || | Sbjct 1370592 CGAGCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAGCGA 1370651 Query 32827 CGCGCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTC 32886 || || || ||| | ||| | || || ||||||||||| || |||||||| || ||||| Sbjct 1370652 GGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGTC 1370711 Query 32887 TA---ACACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGA 32943 || ||||| | || ||||||| | | |||||||| |||||| ||| | || Sbjct 1370712 TAATGACACC---CTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGGA 1370768 Query 32944 ATTGTACACCACAGA 32958 | || ||||| || Sbjct 1370769 AACTTATACCACTGA 1370783 >seq26895 Length=1000185 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 |||||| ||||| |||||||| ||| | ||||||| ||| |||||||| || || || | Sbjct 288911 GTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTT 288852 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 ||||||||| || | || || || ||||| || || | |||| |||||||||||||| Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 112523 GTGAAAACCGTG 112534 ||||||||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq48925 Length=1097090 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || |||||| || || || ||||| |||||||| |||||||| || | || || | Sbjct 515173 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 515232 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | |||||| | | | | |||||| |||||| || ||||| ||| | || || Sbjct 515233 CTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGA 515292 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||| | || | || |||||||| |||||||||| || || |||| || Sbjct 515293 TCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTA 515352 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 ||||| || || || || || | || |||||||||| | |||||||| || Sbjct 515353 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAA 515406 >seq9460 Length=1391182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109044 CAGCGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGA 109103 || ||| || || || | || ||||||||||| || |||||||| ||||| ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 109104 AATAATGCGTTGGCTTGAGGGTGACGACCCAGC 109136 ||| ||||| ||| | ||||| |||||||| || Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGC 538724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425016446174440