Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq18715 284 1e-71 seq26895 122 7e-23 seq23042 98.7 8e-16 seq48925 82.4 6e-11 >seq18715 Length=1377716 Score = 284 bits (314), Expect = 1e-71 Identities = 671/995 (67%), Gaps = 39/995 (4%) Strand=Plus/Minus Query 96027 ATTTCGTTTTTGATTTGGCGATAATCAACAACGCCATCTTCCCAAGTGCCCGAAACGGGC 96086 ||||| ||| |||| | ||||||||| || || |||| |||||| || || || Sbjct 1370978 ATTTCATTTGCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGT 1370919 Query 96087 CCGTTACTACTTCCCAAAAAATAG-TTATCGTTTTCGTAATT-TGACACTCCAGTCCAGC 96144 || | | || ||| ||| | || | |||||||| || ||| || || ||||||| Sbjct 1370918 CCAGT-CGCGTTGCCAGTGAATGGATTGTTATTTTCGTAGTTGTGA-ACCCCGGTCCAGC 1370861 Query 96145 CGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACGCCTTGATTTGTGA 96204 | || |||||||| || || ||||| | ||| || |||| ||||||||| | | Sbjct 1370860 CTCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGA---GCAA 1370804 Query 96205 GCAA---TTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGT 96261 |||| ||| || || ||| ||| | || || || ||||||||| || |||| Sbjct 1370803 GCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGT 1370744 Query 96262 ACAGTGTAGTTTGGTATCCCAAA---TCAATGTTTGACCACGCGCCTTTAAAATCGTAGC 96318 | || | || || | || | ||| || ||||| |||||||||||||| || | Sbjct 1370743 AAAGCGGTGTCTGATGACCGAGGGTGTCA---TTAGACCAGGCGCCTTTAAAATCATAAC 1370687 Query 96319 TCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTACAGCAATTT 96378 ||||||| || || | || | | | || || || || ||| | || || ||| | Sbjct 1370686 TCATGAGGAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCT 1370627 Query 96379 TGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGCA 96438 | || || ||||| || || |||| |||||| | || || || | | | | Sbjct 1370626 TATCCCATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCT-CTTCAGAA 1370568 Query 96439 AC-TCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCAGCGTCGCGC 96497 | |||| ||||| | ||||||||||| | || || |||| | | || | Sbjct 1370567 AGGTCGTTCAACATTTCACGCAATTCCTTCATTAA----TTCAACGTA--AACATCTCCG 1370514 Query 96498 TCTTT---GTTGCCGAGCGTC-GGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGAT 96553 || || | | || || ||| ||||| || || |||||||| || |||||||| ||||| Sbjct 1370513 TCCTTAGGGCTTCCTAG-GTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGAT 1370455 Query 96554 GTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTACAAACAC 96613 || || |||||||| || ||||| | | ||| ||| | || || || || || Sbjct 1370454 ATCAACACCGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAA--- 1370398 Query 96614 GCGCCGTTTTTCCGC---GTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCC 96670 ||| | | | | | | |||| | | | |||| || |||| || |||||||| || Sbjct 1370397 GCGACCTCTCTTCTCTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCC 1370338 Query 96671 GATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAAA 96730 ||| || || ||||||||||| | || | || ||||| | ||||| ||||||||| Sbjct 1370337 GATGGAAGGTAGAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAA 1370278 Query 96731 GTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGC 96790 |||||||||||| || || ||||| | ||||| ||||| || || || || | ||||| Sbjct 1370277 GTTGCCTTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGC 1370218 Query 96791 CCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGC 96850 ||| ||||||||||||| |||||| |||||| ||||| ||| || ||||| || || Sbjct 1370217 CCACGGGTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGC 1370158 Query 96851 TTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATG 96908 || ||||| || | | | ||| || | ||||| | ||||||||| || ||||| Sbjct 1370157 TTGGAAACTGCCTTCGATCTCCTTTAAACTG--TCGTTGATGCCGTCGCCTCCGCAAATA 1370100 Query 96909 GGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAG 96968 || || || |||||||| | ||| | || || || | ||| || || || || || Sbjct 1370099 GGAATGAAACCGTACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAAT 1370040 Query 96969 TTACGACCATACACGCCCCATTCCACAAAATACGC 97003 || | || || |||||||| ||||| ||||| Sbjct 1370039 TTTCTTGGGTAAACACCCCATTCAACAAAGTACGC 1370005 >seq26895 Length=1000185 Score = 122 bits (134), Expect = 7e-23 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19398 CACGGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCGAG 19457 ||||||||||||||||||||||||||||| | || || || ||||| || ||||| | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 19458 CATTTTAACCCCACGCATCAACAGCATGGTGCCCCCGACGCCGCAGAGCGGCACGTTGGT 19517 || |||||||||| | || ||||||| |||||| ||||||| | ||| ||||| || Sbjct 288840 CACTTTAACCCCAACAAGCAGGAGCATGGCGCCCCCAACGCCGCTGTGCGTCACGTCGGC 288899 Query 19518 GACCTGGGCAAC 19529 ||||| |||||| Sbjct 288900 GACCTCGGCAAC 288911 >seq23042 Length=5275587 Score = 98.7 bits (108), Expect = 8e-16 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 29296 AACGACGCCGACTCGCCGTACCGCGTGCTGCTCATGTCCATCAAATGCGG-CGGCGTGGG 29354 |||||| ||| |||||| |||||| |||| | || | | ||||| ||| ||||| Sbjct 2566200 AACGACCCCGCGTCGCCGGTGCGCGTGATGCTGCTCTCGCTGAC-TGCGGGCGGAGTGGG 2566142 Query 29355 GCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGGAACCCGCAGGT 29414 ||| || || |||| || ||||| | || |||| |||||||||||||||||| | Sbjct 2566141 GCTCAACCTGTGCGGCGCCAGTCACCTGCTGCTGCTGGACCCGCACTGGAACCCGCAGCT 2566082 Query 29415 GGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG-CGCAAACGCGCGCACGTGT 29473 |||| ||||||||||| |||| | |||| |||| ||| ||| | || |||||||| Sbjct 2566081 GGAGCAGCAGGCGCAGGACCGCGTGTACCGCGTGGGGCAGACGC-GCCACGTGCACGTGT 2566023 Query 29474 AC 29475 || Sbjct 2566022 AC 2566021 >seq48925 Length=1097090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| ||||||| |||| || || || || ||||| || ||||||||||||| | Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || || |||||||| || | || | | || || || || Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| | || || | | | |||||| || || Sbjct 515283 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 515224 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 || | || |||||||| || || || ||||| || || ||||||||| | |||| Sbjct 515223 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTAGC 515169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404776045149130