Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21925 192 4e-44 seq31034 140 2e-28 seq48925 132 3e-26 seq61578 107 1e-18 >seq21925 Length=2008241 Score = 192 bits (212), Expect = 4e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| |||||| | | ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1596504 CACCATGGGGTCGGTCAACGTGAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAGAT 1596563 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||||||||||||||||||||| ||||| ||||| ||||| || || || ||||| ||||| Sbjct 1596564 GCCGCGCATCTGCGCCAAGGTGGAGGGCAAGGGCAACGGCATCAAGACGGTCATCGTCAA 1596623 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 |||||| ||||| || ||||||||||| | || ||||||| Sbjct 1596624 CATGCCCGAAGTGGCCAAGGCGCTCGGCAGACCCGCCACCT 1596664 Score = 152 bits (168), Expect = 3e-32 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || ||||||||||| |||||||| | ||| ||||| || |||||||| ||||| || ||| Sbjct 1597109 TTCATTCGCAAGTTCGTGCTGTGCCCGGAGTGCGACAATCCGGAGACGGAGCTGATCGTG 1597168 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || || |||| |||| |||||| ||||||||||| |||||||| ||||| ||| || Sbjct 1597169 TCGACGAAGAAGAACAGCATCTCGCAGGGCTGCAAGGCGTGCGGCTACCACGGCGCCCTC 1597228 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAAAGACCCTAGC 6617 || || ||||| ||||| ||||||||||||||||| || || || ||||| || Sbjct 1597229 GAGTTCAACCACAAGCTCAATACCTTCATACTGAAGAACCCGCCCGCTGCTGACCCAAGT 1597288 Query 6618 ACGCAGG 6624 ||||| Sbjct 1597289 GTGCAGG 1597295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || || ||||| ||||| || || || ||||| ||||| || ||| |||| Sbjct 1596885 ACCCCACCAAGTACTTCGGCTGCGAGCTGGGTGCGCAGACCCAGTTCGACTTCAAGAACG 1596944 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 ||||||||||||| ||||| || |||| |||||||| |||||| | || ||||| Sbjct 1596945 AGCGCTTCATCGTCAACGGCAGCCACGACTCCGCCAAGCTTCAGGACCTGCTGGACGG 1597002 >seq31034 Length=2072735 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2061790 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2061849 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2061850 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2061884 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064225 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2064284 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 2064285 GGTAATATTTAGCCTTA 2064301 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 2072007 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 2072066 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2072067 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2072101 >seq48925 Length=1097090 Score = 132 bits (146), Expect = 3e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 ||||||| |||| | | ||||||||| ||||| || ||||| || || ||||| | Sbjct 515408 CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGT 515349 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| |||| | || ||||| ||||| ||||| || || | | ||| ||||| | Sbjct 515348 CGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTG 515289 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||| |||||||| |||||| || ||||| | || ||| || || Sbjct 515288 GTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTT 515229 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| ||||| || || ||||||||||| | |||||| ||||| |||||||| |||| Sbjct 515228 CAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTA 515171 >seq61578 Length=3623949 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || || ||| ||||| || || || || | Sbjct 3475975 TACCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTG 3475916 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || || ||||| ||||| || || || ||||| || || | || Sbjct 3475915 ATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGG 3475856 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| || || |||| || ||| ||| ||||| Sbjct 3475855 GGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAA 3475796 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||||| || || |||||||| || ||||| |||||||| Sbjct 3475795 CTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | |||||| |||||||| |||||| || || |||||||| || | ||| | Sbjct 3476190 ACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACC 3476131 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || ||||| ||||| || || || ||||| || || | ||||| |||||||| Sbjct 3476130 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTT 3476071 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||| || || |||| | ||| ||| | ||||||||| | || || Sbjct 3476070 GTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGAT 3476011 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || ||||| |||||||| Sbjct 3476010 GGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | || | || ||||| || || ||| || ||||| ||||| |||| Sbjct 3474668 TACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAG 3474609 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || || ||||| ||||| || || | | ||| || || | || Sbjct 3474608 ACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGG 3474549 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || ||||| || || ||| ||||| | | || || ||||| Sbjct 3474548 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAA 3474489 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || || || || |||||||| || || || |||||||| Sbjct 3474488 CTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | || | || ||||| || || ||| || ||||| ||||| |||| Sbjct 3474440 TACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAG 3474381 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||||| ||||| || || | | || || || | || Sbjct 3474380 ACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGG 3474321 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || ||||| || || ||| ||||| | | || || ||||| Sbjct 3474320 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAA 3474261 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || ||||| || |||||||| || || || |||||||| Sbjct 3474260 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | || | || ||||| || || ||| || ||||| ||||| |||| Sbjct 3474212 TACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAG 3474153 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | |||| ||||| || || | | || || | | || Sbjct 3474152 ACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGG 3474093 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || ||||| || || ||| ||||| | | || || | || | Sbjct 3474092 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCA 3474033 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | ||||| || || || || ||||||||||| |||||||| |||||||| || || Sbjct 3474032 CCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTTGTA 3473978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334689259987397