Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq48925 560 1e-154 seq48068 118 1e-21 seq63168 86.0 8e-12 >seq48925 Length=1097090 Score = 560 bits (620), Expect = 1e-154 Identities = 1209/1792 (67%), Gaps = 36/1792 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | |||||| ||||| | | | || || || | |||| ||| |||||||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| | ||||| ||||||| || || ||| | ||| |||| | || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | ||| || || | ||||||||||| || || || ||||| ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 ||||| || | || || || ||| ||||||| |||||||| ||||| || |||||| Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT-AATATC 840063 Query 62080 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 || ||| | | | |||| |||||||| ||| | || ||| |||||| || Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 || || | |||||| | | || ||||| |||| | | ||| | ||||| || || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTG 840183 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 |||||||||||||| || | | |||||| || || ||||||| | ||||| Sbjct 840184 GAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTC 840243 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA-AACT-- 62313 ||||||||| || ||||| || || || || || ||||| || || | ||| || | Sbjct 840244 ATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTA---ATAGAAGTGA 840300 Query 62314 ATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371 ||| | || || ||||| | ||||||||||| ||| ||| ||||| ||||| Sbjct 840301 ATTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCA 840358 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62430 | || ||| | || || | || || | || |||| | Sbjct 840359 GTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACT-TCCTTC 840417 Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490 ||||||| || ||| || || | || ||||||||||| || |||||||| ||||| Sbjct 840418 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTA 840477 Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 ||| |||||||||||||| | | || || | ||||| || ||| ||||| Sbjct 840478 ATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 840537 Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62610 | || | ||| | || ||||| ||||| || |||||||| |||||||| || | Sbjct 840538 GCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACG 840597 Query 62611 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62670 | | ||||| ||| ||||| || | || ||| |||||| ||| ||||||||||| || Sbjct 840598 CATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 840657 Query 62671 ATT-TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT- 62728 || | || | | ||||| || || |||| || | ||| | || |||| Sbjct 840658 GTTCTGTGTGATTATCTTTGTG-ACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 62729 -ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 |||| ||||| | ||||| |||| || || | ||||||||| || || |||| || Sbjct 840717 CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTG 840776 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | |||| | || || ||||| | |||||| || || ||||| || | ||||| || Sbjct 840777 AAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTT 840836 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 ||||||| ||| | ||||| | ||| ||||| || ||| |||| || || ||||| | | Sbjct 840837 GATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTT 840896 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCT 62961 | | |||||| || |||||||| | || |||| ||| ||| | |||| Sbjct 840897 GTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCT 840951 Query 62962 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 ||||| ||| ||| | ||||||| ||| || || ||||||||| || | || Sbjct 840952 TTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAG 841011 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081 || || || |||| |||||||| | |||| | | || | | || |||||||| Sbjct 841012 ACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCAT 841071 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 ||| | ||| || ||||| | || ||||| ||||| | || || || || || Sbjct 841072 AAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCC 841131 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 ||||||||||| ||||| | ||| | | || |||||| ||||| ||||| | ||| || Sbjct 841132 AGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAAT 841191 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 || | |||| || ||||| || ||||| || || | || || || || ||||| || Sbjct 841192 AGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTA 841251 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 |||||||||||||| | | |||||||| ||||| || || | || ||| | || Sbjct 841252 CACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACC 841311 Query 63322 ACTGGCACGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 | || | || | || ||| || ||||| || || || ||| |||||||| | Sbjct 841312 TTTTGCCCTGATGCAATGAACATGA-AGGCCTATACCACCAGCAGATTTTGAGATTAAGG 841370 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | ||| |||||| || ||||| || ||||| || |||||||| |||| | || | Sbjct 841371 CACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGA 841430 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 | || ||| | ||| | | |||| | || ||||| || ||| || |||| Sbjct 841431 AGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAG 841490 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGA 63559 |||| |||||||||| | | |||||| || ||||| ||||| || || || || | Sbjct 841491 TAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG- 841549 Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 || ||||| | | ||| ||||| | ||| ||||||||||||||| | |||| Sbjct 841550 TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAATCT 841601 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || |||||||||||||||| ||| || | |||| ||| || ||||| | ||||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | |||||| ||||| || |||| || || | | |||||||||| || ||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATT 63982 ||||| || || || || |||||| |||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACTGATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 32926 TAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTT 32985 ||| ||||||||||||||| | ||||| || || || | ||||| || || |||| Sbjct 224871 TAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTT 224812 Query 32986 GAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTA 33045 ||||||| || ||| | || || || || || |||||| ||||||| ||| ||| Sbjct 224811 GAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTA 224752 Query 33046 AATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||| ||||| ||||| || ||| || |||||||| ||||| |||||||| ||||| Sbjct 224751 AATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAA 224694 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/222 (69%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || ||| ||| | || ||| || || || || ||||||| ||| ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || || || ||||| ||||||||||| |||||||| || || ||||||| Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 32857 ||| | ||| || || || |||||| || ||||| | | ||||| || Sbjct 225294 CAACTATTCTTTCCCC--AAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTC 225237 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||||||| |||||||| || | || || | ||||| || Sbjct 225236 TGCCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| ||||| ||||| ||||| || || || || |||||||||||||| | | Sbjct 224550 TTGGATAAATCAACTTCCTCCACAGTCCAGAACGAAGCTTCAGCCTTTTTATACATTTGC 224491 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || ||| ||||||| || ||||| || || || Sbjct 224490 CAAATATCAGGATATTGGATAGGAAAGATGACGAA 224456 >seq63168 Length=2713828 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 155201 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 155260 || |||||||| ||| ||||| | || || | | ||| | || |||| |||| ||| Sbjct 1029513 CCTATGTTAGCTGAAGCGTGTAAGTCGGTAGAAATGGCTATGAAGAAATGTCCAAATGGA 1029454 Query 155261 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAA 155307 |||||| | ||| ||||||| ||||| |||||||| ||||||||||| Sbjct 1029453 ATGTTTTCAGAAATCAAATATGATGGAGAGAGAGTGCAAGTTCATAA 1029407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633131533685200