Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18715 297 2e-75 seq48925 132 4e-26 seq61578 120 3e-22 seq63174 96.9 3e-15 >seq18715 Length=1377716 Score = 297 bits (328), Expect = 2e-75 Identities = 667/993 (67%), Gaps = 23/993 (2%) Strand=Plus/Minus Query 57178 ATTTCGCTTGCAATTTGCTTGTAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGC 57237 ||||| |||| |||| | |||||||| || || || | ||| || || | ||||| Sbjct 1370978 ATTTCATTTGCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGT 1370919 Query 57238 CCACTTCCTTTACCCGTGAACGGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCT 57297 ||| | | || || ||||| |||||||| | ||||| ||| || || ||||| ||| Sbjct 1370918 CCAGTCGCGTTGCCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCT 1370859 Query 57298 CGACCGTACATGGCCACGCCAACCACTATTTTGTCAGCGGACACGTTCTGCGCTAACAAA 57357 || |||||||| || || || ||||| || || | || | ||| || || | |||| Sbjct 1370858 CGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAA 1370799 Query 57358 GTGCGTACAGCATTGTCTGTGGTATATGGTTCGCTAGGGTTCCACAGAGGCGCATAAATG 57417 ||| || ||| |||||||| | ||| | |||||||| ||| || |||| Sbjct 1370798 TATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGC 1370739 Query 57418 TTGGTTTGATAGCCCAAATTTGTG-TTACTCCAGGCACCTTTAAAATCGTACGACATTAA 57476 || |||| | || | ||| ||| |||||| ||||||||||| || ||| | Sbjct 1370738 GGTGTCTGAT-GACCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAG 1370680 Query 57477 GAATATGCTGTCGAGATATTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATT 57536 ||| ||| || | ||||| || || | |||||||||| | || || ||||| Sbjct 1370679 GAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCA 1370620 Query 57537 ACCGGCGCCGATGGCTGTTGTGAGCAATAGTTTACGATCAGTTTC--CAGTTCCAACTCG 57594 || || | || || | || ||| ||| | | || || ||| | ||| Sbjct 1370619 TCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAA--AGGTCG 1370562 Query 57595 TCCAACATTAATCTCAAATCTTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGG 57654 | ||||||| | ||| || |||| || ||||| |||||||| | ||| Sbjct 1370561 TTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCCTTA---GGG 1370505 Query 57655 TCGCCCAACAAAGGATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCA 57714 || | ||| ||||| || ||||| ||||| ||||||||||| || || || || Sbjct 1370504 CTTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCG 1370445 Query 57715 TCAAAAAATTTCCACACTTTGATGTAG-TCGCGCACCGATTGCACAAAAGTGTTGCGAA- 57772 || || || ||||| || || | | || ||| || | || || |||| Sbjct 1370444 TCGAAGAACTTCCAGG-TTAGAAGAAAATCTTTCACAGAATCAACGAA------GCGACC 1370392 Query 57773 --TAGTGTC---GTCGTGCATGAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGGA 57827 | | || |||| | ||| ||||||||||| | | ||||| || || ||||| Sbjct 1370391 TCTCTTCTCTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGA 1370332 Query 57828 TGGCAATACTTTTAGATGCGGATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACC 57887 || | | ||| || | || |||| ||||| | |||||| |||||||| || || Sbjct 1370331 AGGTAGAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCC 1370272 Query 57888 TTTGTAAGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGG 57947 |||||| ||||| ||||| | || | ||| | || ||||| || || || ||||| || Sbjct 1370271 TTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGG 1370212 Query 57948 ATCGTGTATCGTTACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAA 58007 ||||| || | |||||||||||||| ||||| || || ||||| | |||| || Sbjct 1370211 GTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAA 1370152 Query 58008 ACTACCTGTAATCGTCTTTAGACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAA 58067 ||| ||| ||| ||||| ||||||||||||||| ||||||||||||||||| | ||| Sbjct 1370151 ACTGCCTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAA 1370092 Query 58068 ACCGTACAACAAATGAGTCAAATTGGGTACGGGTACTTTATCAACTGGATATTTACGACC 58127 ||||||||| | ||| |||| ||| || | ||||| ||| ||||| |||| | Sbjct 1370091 ACCGTACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGG 1370032 Query 58128 GTACACACTCCACTCCACGAAATAAGCTCCCAC 58160 ||| |||| ||| || || || || ||||| || Sbjct 1370031 GTAAACACCCCATTCAACAAAGTACGCTCCGAC 1369999 >seq48925 Length=1097090 Score = 132 bits (146), Expect = 4e-26 Identities = 174/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || ||||| || | || |||||| |||| || | || || || | Sbjct 515173 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 515232 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||||||||| | || |||| |||| ||| |||||||| || |||||||| Sbjct 515233 CTCTGACACTATCGAA--AATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCACC 515289 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || | | || || ||||||||||| |||||||||| || || || ||| Sbjct 515290 AGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGA 515349 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || || || ||||| || || || || ||| | ||||| ||||||| ||| Sbjct 515350 CTACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGGTAAT 515407 >seq61578 Length=3623949 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||| || || || ||||||| ||||||| || | || Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | | |||| |||| || ||||||||||| || || || ||||| Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAATCCAA-GACAAAGAAGGTATCCCCCCAGACCA 3476093 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || ||||||||||| || || |||| ||| || | ||||||||| Sbjct 3476094 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAA 3476153 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || ||||| Sbjct 3476154 CATCCAGAAGGAGTCTACTCTTCACTTGGTGCT 3476186 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| |||||||| | ||||| || | || Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474331 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||||||||| | ||||||| ||||| || || ||||| Sbjct 3474332 CAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474391 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || |||||||| || Sbjct 3474392 ATTCAGAAAGAGTCAACCCTGCATTTAGTACT 3474423 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474559 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||||||||| || ||||||| ||||| || || ||||| Sbjct 3474560 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAAC 3474619 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || |||||||| || Sbjct 3474620 ATTCAGAAAGAGTCAACCCTGCATTTAGTACT 3474651 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | || || ||||||| || | || Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 25059 GACACTATCGAG-TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | | |||| |||||| ||||||||||| || || || ||||| Sbjct 3475807 GACACTATCGAGAACGTTAAAGC-TAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCA 3475865 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || ||||||||||| || || |||| ||| || | || || || Sbjct 3475866 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAA 3475925 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || || || Sbjct 3475926 CATCCAAAAAGAGTCGACACTCCACTTGGTACT 3475958 >seq63174 Length=598887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 51103 TTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCC 51162 |||||||| | ||||| | ||||||||||| |||| | ||| ||||| | || Sbjct 163685 TTAGGATCTCTGCCATCTATACTGTAATGATCATTTAAATGTATTGCATATTTAAGAGCA 163744 Query 51163 ATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCG 51222 || | | | ||||||||||| | ||||||||| |||| |||||||||||| | || Sbjct 163745 TCCTCGGGAGTTGGCGTCCATTCTAGAATTTTCTTTCCCCAATACATGCGCATGAAGCCA 163804 Query 51223 TGCATCTTGCCCTC-GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 ||||||||||| || || || |||| ||| || | ||||||| || || ||||| Sbjct 163805 TGCATCTTGCCTTCTTTGACCAA-CTGCAGTTGCGCAGCATTCCACAGATCATCATGAGT 163863 Query 51282 TT 51283 || Sbjct 163864 TT 163865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 51106 GGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG 51165 ||||| | ||||| | ||||||||||| |||| | |||| | ||| | ||| Sbjct 159906 GGATCTCTGCCATCTATACTGTAATGATCATTTAAATATATTGAATATTGAAGTGCATCT 159965 Query 51166 TCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGC 51225 |||| ||| ||||||||||| | ||| |||||| ||| ||||| || | | | || ||| Sbjct 159966 TCTGGACTCGGCGTCCATTCTAGAATCTTCTTGCACCAATACATACGAAGGAAGCCATGC 160025 Query 51226 ATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTT 51283 |||||||| || ||||| ||| || || ||||||| ||| || ||||||| Sbjct 160026 ATCTTGCCTTCTTTGACCAGCTGTAGTTGTGCTGAATTCCACAGTTCATCATGAGTTT 160083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 |||||| || | ||||| | ||||||||||| || | |||| ||||| | ||| Sbjct 171046 GTTAGGGTCTCTGCCATCTATACTGTAATGATCATTCAAGTATATTGCATATTTAAGTGC 171105 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 |||| ||| |||||||| | ||| |||||| |||||||||| || || | || Sbjct 171106 ATCATCTGGACTCAAAGTCCATTCTAGAATCTTCTTGCCCCAGTACATACGGATAGAGCC 171165 Query 51222 GTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 |||||||||||| || ||| || ||| || |||||||| | || || ||||| Sbjct 171166 GTGCATCTTGCCTTCATTTACAAGTTGTAGTTGTGCAGAGTTCCAAAGATCATCATGAGT 171225 Query 51282 TTG 51284 ||| Sbjct 171226 TTG 171228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432994297763405