Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq18715 313 3e-80 seq9460 147 2e-30 seq26895 86.0 7e-12 >seq18715 Length=1377716 Score = 313 bits (346), Expect = 3e-80 Identities = 803/1211 (66%), Gaps = 45/1211 (4%) Strand=Plus/Minus Query 51249 CCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCACGCA 51308 || || ||| || ||||||||| | ||| || || ||||| || || || |||||||| Sbjct 1371191 CCGAGACCCATGTTCATGGCGTTTAATAGTTCACCATTGTCTGCATCAATCTCCCACGCG 1371132 Query 51309 AACAATCCCGCCAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCGAGCG 51368 ||||| || ||| | || || |||| ||| || || | ||||| | Sbjct 1371131 AACAAACCGCCCAGCTTATTGTTTCTTACATACTTGCCTTTCGCAATAGTCGATCGGGGA 1371072 Query 51369 TTGTCGAACGTGATCAGGTTGCCCG-CGATCGGTTCGAAGCCGTACGCAGCCTCGGCGAT 51427 || ||| |||| || |||| || | |||| || ||| | || | ||| || || | Sbjct 1371071 TTATCGTACGTTATTAGGTCACCGGTCGAT-GGCCGGAACACATAAGGAGCTTCAGCAAC 1371013 Query 51428 CAGATCGTAGTAGAACTCGTAGT---CTTTGACGAACTCGTTCGCGATCTGCCGATAGTC 51484 |||||| | |||||| | | | | ||| || || || || | | ||| || Sbjct 1371012 GTTATCGTAATGGAACTCCCATTTGCCCATAGCGATTTCATTTGCTATTTCTCTATAATC 1370953 Query 51485 GACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACCA--- 51541 || || || | || ||| || |||| || ||||| ||| ||| |||| Sbjct 1370952 AACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTGCCAGTGAATGGATT 1370893 Query 51542 GTTCGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGCC 51601 ||| |||||||| || | | || || ||||| || ||||||| || || || Sbjct 1370892 GTTATTTTCGTAGTTGTGAAC---CCCGGTC---CAGCCTCGTCCGTACATAGCTACACC 1370839 Query 51602 GACGACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTCGGT 51661 || || ||||||| | | ||||| || | || | | ||| || |||| || Sbjct 1370838 CACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 1370779 Query 51662 GGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATC 51721 ||| || |||| | ||||||||| || ||| | || | ||||| | || || Sbjct 1370778 GGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATGACCGAG--- 1370722 Query 51722 GGTGT---TGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTG 51778 ||||| | ||||| || || || ||||| || ||||||||||||||| ||||| | Sbjct 1370721 GGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTA 1370662 Query 51779 CGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCT 51838 |||| ||| ||| ||||| |||||||| ||||| | || || || || ||| Sbjct 1370661 TTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGA 1370602 Query 51839 GGTCAACAGGTACGAACGGTTCGTGGCGG-CGCTCAAC-----TCGTCGAGCATGTCGCG 51892 |||| | ||| ||| | ||| | || | |||| | ||| || || Sbjct 1370601 AGTCAGCTCGTAT------TTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACG 1370548 Query 51893 CAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATC----GGGATCGCCCAGGT 51948 || || ||| | ||||| | |||| | || ||| | || |||| Sbjct 1370547 CAATTCCTTCATTAATTCAACGTA------AACATCTCCGTCCTTAGGGCTT-CCTAGGT 1370495 Query 51949 CGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACT 52008 | || || || || || ||||| || || ||||| |||| || || ||||||||||||| Sbjct 1370494 CAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACT 1370435 Query 52009 TCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGC-GTCG 52067 |||| || || ||||| || || || || |||||| | | || ||| |||| Sbjct 1370434 TCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTT-CTCTTTGTCG 1370376 Query 52068 TGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGC 52127 | ||||||||| ||||||| || ||||| || ||||| || || ||||| || || Sbjct 1370375 GTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGT 1370316 Query 52128 GAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTC 52187 ||| |||| ||||| | ||||||||| |||||||| || ||||| || || ||| Sbjct 1370315 TCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTC 1370256 Query 52188 CAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACC 52247 |||| || | || ||||| || ||||| || || ||||| || |||||||| | || Sbjct 1370255 CAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACT 1370196 Query 52248 TTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGT 52307 || || || | ||| ||| || ||||| | |||| ||||||| |||||| Sbjct 1370195 TTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCC 1370136 Query 52308 TTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGC 52367 || | |||||||||||||||||||||||||| || |||||||| ||||||| |||||| Sbjct 1370135 TTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGC 1370076 Query 52368 GACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCG 52427 | ||| || || | ||| || |||| || || || || | |||||| |||||||| Sbjct 1370075 GTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCA 1370016 Query 52428 ACAAAGTAGGC 52438 |||||||| || Sbjct 1370015 ACAAAGTACGC 1370005 >seq9460 Length=1391182 Score = 147 bits (162), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38432 CACCTATAAATACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGG 38491 ||||| ||| ||||||| | ||||| |||| || | || |||| |||||||| Sbjct 538917 CACCTTCAAAGACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGG 538976 Query 38492 CTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAA 38551 ||||| ||| | ||| ||| ||| | ||||| |||| |||| ||||||||| || Sbjct 538977 CTTCTTCTACACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAA 539036 Query 38552 GGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGC 38611 |||||||||| | |||| ||||||| |||||||||||||||||||||| | ||||| Sbjct 539037 GGACTGGGAGAACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGC 539096 Query 38612 TTACGTGCTCACC--GTCAAAGGCGCCGACTACGTTCAA 38648 |||||| ||| | || |||||| ||||||||| ||| Sbjct 539097 TTACGT--TCAGCTGGTGAAAGGCCGCGACTACGTACAA 539133 >seq26895 Length=1000185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || || ||||||||||| || |||| | || |||||||| || || || | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACG-CGCTCGTTCGTCACGTTGG 127662 ||||| || |||| | ||| || || || ||||||| |||| || |||||||| || Sbjct 288840 CACTTTAACCCCAACAAGCAGGAGCATGGCGCCCCCAACGCCGCT-GTGCGTCACGTCGG 288898 Query 127663 CGACCTGGGCAACGTGGAGGC 127683 |||||| |||||| | || || Sbjct 288899 CGACCTCGGCAACATTGAAGC 288919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537178580832520