Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq48068 165 9e-36 seq47345 145 8e-30 seq59535 143 3e-29 seq41544 141 1e-28 seq43931 140 4e-28 seq25930 140 4e-28 seq36905 134 2e-26 seq62105 129 7e-25 seq18997 123 3e-23 >seq48068 Length=254185 Score = 165 bits (182), Expect = 9e-36 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| || |||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 224869 ATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTTGA 224810 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || | || ||||| ||| || |||||||| ||||||| |||||| | | Sbjct 224809 AATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTAAA 224750 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| ||||||||||| || || |||||||| ||||| | ||| || ||||| || Sbjct 224749 TTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAAGTGC 224690 Query 93542 TTCTCATCAT-CTTTAAGCTTATCCCAATCGGATA 93575 ||||| | |||||| ||| |||||||| |||| Sbjct 224689 CTCTCACAGTCCTTTAAACTT-TCCCAATCTGATA 224656 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 93125 GATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAAT 93184 || || | |||||||||||| || | ||| || | | || || ||||| | ||| || Sbjct 225403 GAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCTTCAACCAGAAA 225344 Query 93185 ATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGT 93244 ||||| ||||| ||||||||||| || || |||||||| || ||||| || || || | | Sbjct 225343 ATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATTCTT 225284 Query 93245 TCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTA 93304 || |||| ||||| | || ||| |||||||| | ||||| || || || ||||| Sbjct 225283 TCCCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTCTGCCTTCTTCTTT 225224 Query 93305 ATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | ||| |||| ||||| | || || || | | |||||| Sbjct 225223 ACACATGGTAAAGTTTCAACTGCATTGAACAAGAAATCTC 225184 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 92896 CTTTTCACCGATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACA 92954 ||| || ||||||| || ||||| || ||| ||||| ||||| || |||||||| |||| Sbjct 226355 CTTCTCTCCGATCAGATC-TACAAGTAGTCTGTCAGCAACAAACTCAATGTACTGCGACA 226297 Query 92955 TCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCT 93014 ||| ||||| ||||| || || || || |||||||| || || || | ||| || | || Sbjct 226296 TCAGTTCACAGTTCATGCCGAGCAGCCGAACAGGTAGTGCATCTGTAAGGAACTCCTGCT 226237 Query 93015 CGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACG 93073 |||| ||||| || || || | ||| | | || | || |||| | || ||||| || Sbjct 226236 CGATGACAACCGCATCCTTGATGATCTGCAGCACACG-CTCTTTGCTCGGCTTTTGCACT 226178 Query 93074 ACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 | || ||| |||| | |||||||||||| || |||| ||| Sbjct 226177 AGGTATTTGAACATCAGGCACGCAAAGTCCGTGTGTAGACC 226137 >seq47345 Length=972 Score = 145 bits (160), Expect = 8e-30 Identities = 99/109 (91%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 38 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 97 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTAT-TGGAATTTTTGTTG 126370 ||||||||||||||||||||||||||||| ||| || ||||||| ||| Sbjct 98 GTGGGTTCGAACCCCACACCTGACAAATTCATATATGTAATTTTTATTG 146 >seq59535 Length=544 Score = 143 bits (158), Expect = 3e-29 Identities = 98/108 (91%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 266 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 207 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||||||||||||||||||||||| || || | ||||| ||| Sbjct 206 GTGGGTTCGAACCCCACACCTGACAAATTAATA-TGTATTTTTTATTG 160 >seq41544 Length=637721 Score = 141 bits (156), Expect = 1e-28 Identities = 93/102 (91%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 97398 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGCG 97457 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||||||||||||||||||| | |||| || |||||| Sbjct 97458 TGGGTTCGAACCCCACACCTGACAGAATATTTTTTTAATTTT 97499 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| Sbjct 103013 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCTAGATTTAAGCTCTGGTTCCCGTATGGGAGC 102954 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 102953 GTGGGTTCGAACCCCACACCTGACA 102929 >seq43931 Length=2439668 Score = 140 bits (154), Expect = 4e-28 Identities = 97/107 (91%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 1557411 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 1557470 Query 126323 GTGGGTTCGAACCCCACACCTGAC---AAATTATTATTGGA-ATTTT 126365 |||||||||||||||||||||||| || || |||||||| ||||| Sbjct 1557471 GTGGGTTCGAACCCCACACCTGACAGAAACTTTTTATTGGATATTTT 1557517 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 1569312 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 1569253 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1569252 GTGGGTTCGAACCCCACACCTGACA 1569228 >seq25930 Length=1184 Score = 140 bits (154), Expect = 4e-28 Identities = 97/107 (91%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 957 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 1016 Query 126323 GTGGGTTCGAACCCCACACCTGAC---AAATTATTATTGGA-ATTTT 126365 |||||||||||||||||||||||| || || |||||||| ||||| Sbjct 1017 GTGGGTTCGAACCCCACACCTGACAGAAACTTTTTATTGGATATTTT 1063 >seq36905 Length=488867 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 179586 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTTGGGAGC 179527 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 179526 GTGGGTTCGAACCCCACACCTGACAGAT 179499 >seq62105 Length=3749462 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 408926 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 408985 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 408986 GTGGGTTCGAACCCCACACCTGACAGAT 409013 >seq18997 Length=881 Score = 123 bits (136), Expect = 3e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 92896 CTTTTCACCGATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACA 92954 ||| || ||||||| || ||||| || ||| ||||| ||||| || |||||||| |||| Sbjct 552 CTTCTCTCCGATCAGATC-TACAAGTAGTCTGTCAGCAACAAACTCAATGTACTGCGACA 610 Query 92955 TCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCT 93014 ||| ||||| ||||| || || || || |||||||| || || || | ||| || | || Sbjct 611 TCAGTTCACAGTTCATGCCGAGCAGCCGAACAGGTAGTGCATCTGTAAGGAACTCCTGCT 670 Query 93015 CGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACG 93073 | || ||||| || || || | ||| | || || | || |||| | || || || || Sbjct 671 CAATGACAACCGCATCCTTGATGATCTGTAGCACGCG-CTCTTTGCTCGGCTTCTGCACT 729 Query 93074 ACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 | || ||| |||| | |||||||||||| || |||| ||| Sbjct 730 AGGTATTTGAACATCAGGCACGCAAAGTCTGTGTGTAGACC 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556420970457880