Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq9460 141 8e-29 seq26895 116 3e-21 seq61578 93.3 4e-14 >seq9460 Length=1391182 Score = 141 bits (156), Expect = 8e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 105402 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105461 ||||||||||| | ||||| ||||| ||||||| | || ||| | || || | Sbjct 538867 ATGCCCGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTCAAA 538926 Query 105462 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105521 || ||||| | | | ||| | |||||| | |||| || ||||| || | |||| Sbjct 538927 GACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTAC 538986 Query 105522 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105581 |||||| | || || ||| ||||| || || |||||||||||||| ||||| |||| Sbjct 538987 ACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAG 539046 Query 105582 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105641 |||| ||||| ||||||||| | || || || ||||| || ||||| | | ||| | Sbjct 539047 AACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAG 539106 Query 105642 CTGGTCAAAGGACACGACTACGTGCA 105667 ||||| ||||| | ||||||||| || Sbjct 539107 CTGGTGAAAGGCCGCGACTACGTACA 539132 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 105161 CAACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGA 105220 |||||| |||||||| | || |||| ||||| || |||||||| || || ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 105221 AATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACA 105280 ||| ||||||||| |||||||||||||||| || || || | || ||||| || || Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGGGCCCCGCA 538751 Query 105281 GTGCCCGTTTTTG 105293 |||||| ||| || Sbjct 538752 GTGCCCCTTTCTG 538764 >seq26895 Length=1000185 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 107645 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGCGT 107704 |||||| | ||||||||||||||| | ||||||| ||| |||||||||| ||| | | Sbjct 288911 GTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTT 288852 Query 107705 AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGCAC 107764 || |||||||| | ||||| || ||||| ||||| | |||| ||||| |||||||| Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 107765 GTGAAAACCGTG 107776 ||||||||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq61578 Length=3623949 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || |||| ||||| || |||||| | ||| |||||| Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| ||||| ||||||||||| | ||| || || Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3475866 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| | ||||| | || |||||||| ||||| ||| || | ||||| | || |||| Sbjct 3475867 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTAT--CAGACTATA 3475924 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || |||||||| || ||||| || || || | ||||| || ||||| Sbjct 3475925 ACATCCAAAAAGAGTCGACACTCCACTTGGTACTCCGTCTCCGTGGTGG 3475973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422714220465400