Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq18715 217 1e-51 seq48925 82.4 5e-11 >seq18715 Length=1377716 Score = 217 bits (240), Expect = 1e-51 Identities = 486/722 (67%), Gaps = 21/722 (3%) Strand=Plus/Minus Query 84012 TTTGACCAAGCACCTTTAAAATCATAATTCATTAAAAATATTTTTCCTAAAGACTTTTGC 84071 || ||||| || ||||||||||||||| |||| | || || | | | | || || Sbjct 1370714 TTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTATTTCTGA 1370655 Query 84072 GCCTCGTCATAGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAAT 84131 |||||| || | ||||| |||||| || | || |||||||||||| || | Sbjct 1370654 GCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGAAGTCAGC 1370595 Query 84132 TCGTAAACCCTGCCAGTTTGCGATTCT---AGCTCGTCTAACATTGCGCGCAGTTCCTCT 84188 ||||| | | || || | ||| || |||| |||||| | |||| ||||| Sbjct 1370594 TCGTATTTCTTACCGGTCTC---TTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTC 1370538 Query 84189 AATATTAAAATGTATGTTTTGGCGTCACGTTCAGCATCCCCCAACGAC-GGGTTGGCTCC 84247 | || | || ||| | |||| | | || ||| | | | ||||| ||||| Sbjct 1370537 ATTAATTCAACGTAAACATCTCCGTC-CTTAGGGCTTCCT---AGGTCAGGGTTAGCTCC 1370482 Query 84248 TTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTAA 84307 || || || || |||||||||||||| || ||||||||||| || ||||| | | | Sbjct 1370481 CTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCAGGTTAGAAG 1370422 Query 84308 AAACTCCTTAACCGAATTTACAAAA--ACGTTTCTTTTTTCAACATTGTGCATGAA--AT 84363 ||| || || || |||| || || || | |||| | | |||| |||| | Sbjct 1370421 AAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCT-----TTGTCGGTGAAGAAG 1370367 Query 84364 AAAACGGGTCCGACAAC-GTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTC 84422 || | ||| || ||| ||||| ||||| ||||| || ||||| || || | || | Sbjct 1370366 AAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCAGGCCTG 1370307 Query 84423 GCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGAC 84482 || ||| | ||||| || ||||| |||||||| || ||||| ||||| | ||| Sbjct 1370306 GCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAC 1370247 Query 84483 ACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAATCC 84542 | ||||| || ||||| || | ||||||||||| ||||| || | || ||| ||||| Sbjct 1370246 AGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTTTGAAATCT 1370187 Query 84543 GCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGAGCA 84602 | || || ||||| |||||||| |||| || |||||| || ||| | || | | Sbjct 1370186 TCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCCTTTAAACTG 1370127 Query 84603 TCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAAATTT 84662 ||||| || || | || |||||||| || |||||||||||||| | || | | ||| Sbjct 1370126 TCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCGTCAGATTA 1370067 Query 84663 GGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAAATAC 84722 || | || || || || || || || | ||| || |||||||||||||| ||| Sbjct 1370066 GGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCAACAAAGTAC 1370007 Query 84723 GC 84724 || Sbjct 1370006 GC 1370005 >seq48925 Length=1097090 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | ||||| | ||||| |||||||| || | || |||||| | Sbjct 515176 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 515235 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || |||||| || |||||||| | || | | || Sbjct 515236 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 515295 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || ||| | ||||| || |||||||| |||||||| | || || |||| ||||| Sbjct 515296 GCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAA 515355 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| || | | |||||||| Sbjct 515356 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 515403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357849011113198