Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq35724 109 1e-20 >seq35724 Length=271492 Score = 109 bits (120), Expect = 1e-20 Identities = 219/322 (68%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 3161 TGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTCA 3220 ||||| | || || | ||| || | | | |||| ||||||| || | |||||| ||| Sbjct 202812 TGCACACCCAGAATTTTTATGCGTTCCGTTTCTTTATCTGCGAGGTGTTGAACTTTATCA 202871 Query 3221 ACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTACG 3280 |||| |||| ||||||| ||| ||| | ||| | | || || || | | ||||| Sbjct 202872 ACGTGGTCGGTCAGATATACTTTATGGACTTCTTCCTTGACGGCGAGTTCTCGACGTACG 202931 Query 3281 GAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGAACCCCAT 3338 | | | || ||||| | || | ||||| |||| || || ||| || Sbjct 202932 GCAGGGACGTGGTGCGCTTCACCGAGATGGAGCCGGAA----GAACGCGAGGA-CCCGAT 202986 Query 3339 GAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTC 3398 | ||| || ||||| | | | || || || || |||||||||||||| ||||| | Sbjct 202987 GGCGCGTGTGTTTCCCAAAGTGACCAAGTGCACCTTCCACAAATACGGTCCCTCGGGAAC 203046 Query 3399 CCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTA 3458 | || | || | ||| || || ||| | ||||| |||| | || |||||||||||||| Sbjct 203047 CGTGCAGAAATTCGACGGCCTGTGCGTGCTCCCTCTGAACATCGTAAACGAGAAGATCTA 203106 Query 3459 CATTTTCCTCTGGTTCTGGTTC 3480 | | ||||| |||||||||||| Sbjct 203107 CGTGTTCCTGTGGTTCTGGTTC 203128 Score = 96.9 bits (106), Expect = 9e-17 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | |||||||| | || | |||||||||| | ||||| |||| Sbjct 202323 CCGTGAAGGGGCTCCTAAAGCTTGACTCCGTTTGCATCGACAATAATGTGTTCCGCTTGC 202382 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 | ||| || ||||||||||||| | ||||||||||| ||||||| || || || |||| Sbjct 202383 ACTACAAGGCCACCGTGATCATCTTGATCGCGTTTTCGCTGCTGGTCACCTCACGCCAGT 202442 Query 2795 ACTTCGGAAAGCTCATAGATTGC 2817 || |||| | | ||| || ||| Sbjct 202443 ACATCGGCGACCCCATCGACTGC 202465 Score = 82.4 bits (90), Expect = 2e-12 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 3377 ACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGA 3436 |||| | |||| | |||||| |||| |||| | |||||||| || ||| || Sbjct 123014 ACAAGTTCGGTTCATCGGGCGAGGTGGAGCGGCACGACGCGCTCTGCATTCTGCCGCTGA 123073 Query 3437 ACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCA 3496 | || |||||||||||||||||| | |||||||||||||||||| | | |||| | || Sbjct 123074 ATGTCGTCAACGAGAAGATCTACGTCTTCCTCTGGTTCTGGTTCGTCATCCTAGGCGTCC 123133 Query 3497 TCA 3499 ||| Sbjct 123134 TCA 123136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12471374974500