Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq18715 232 6e-56 seq61578 100 2e-16 >seq18715 Length=1377716 Score = 232 bits (256), Expect = 6e-56 Identities = 351/494 (71%), Gaps = 9/494 (2%) Strand=Plus/Plus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || || ||||| |||||||| ||||| || ||| |||| || ||||| ||||| || Sbjct 1370005 GCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTACCGATT 1370064 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 || ||| || | ||||| | || || || | || |||||||| || || || |||||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 20566 GACGCGTTAAAGTTG-TCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGG 20624 ||| |||||| | || || | |||| |||| | ||||| || ||| || Sbjct 1370125 GACAGTTTAAAGGAGATCGAAGGC----AGTTTCCAAGCTCTTCAACGATCATGCAGCGG 1370180 Query 20625 CCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAA 20684 ||| || |||| |||||| | || ||||| || ||||||||||| ||||| ||||| || Sbjct 1370181 CCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAA 1370240 Query 20685 AGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAA 20744 ||| | || || ||||| ||||| |||||||| |||||||||||| ||||| | || Sbjct 1370241 GGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAA 1370300 Query 20745 ACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCC 20804 || || ||| | |||||| | |||||||| ||||| || |||||| | ||||||| Sbjct 1370301 ACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCC 1370360 Query 20805 GTTTTATCATATGCACGATCCGATCGTACGCCAAGT--TTTCATCGATTCTGTGGAAGAG 20862 || | || | | ||| | | | | | | || ||| | ||||||||| |||| Sbjct 1370361 CTTCT-TCTTCTTCACCGACAAAGAG-AAGAGAGGTCGCTTCGTTGATTCTGTGAAAGAT 1370418 Query 20863 TTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGC 20922 ||| | | || ||||| ||||| ||||| ||||| || || ||||| || || || || Sbjct 1370419 TTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGT 1370478 Query 20923 AAAGGTGCGAATCC 20936 || || || || || Sbjct 1370479 AAGGGAGCTAACCC 1370492 >seq61578 Length=3623949 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||||||| | || || ||||| ||||||||||| || Sbjct 3474441 ATACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCA 3474382 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || ||||| || ||| |||| | | ||| ||||| || Sbjct 3474381 GACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGG 3474322 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | ||||| ||||| | || ||| Sbjct 3474321 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCA 3474262 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| || || ||||| |||||||| Sbjct 3474261 ACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || |||||||| ||||| || || Sbjct 3475976 ATACCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTC- 3475918 Query 114213 CTCATAGT--ACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | ||||| |||| ||| || | ||||| || ||| |||| ||||| || ||||| | Sbjct 3475917 -TGATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTG 3475859 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGAT 114329 | || || ||||||||||| || ||| | |||| | | || | ||||| | || | Sbjct 3475858 GGGGGATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGT 3475800 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | ||| | || ||||| |||| || || || || |||||||| Sbjct 3475799 TCAACTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||||||| | || || ||||| ||||||||||| || Sbjct 3474669 ATACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCA 3474610 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | ||||| || ||| |||| | | || ||||| || Sbjct 3474609 GACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGG 3474550 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | ||||| ||||| | || ||| Sbjct 3474549 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCA 3474490 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||| || || ||||| |||||||| Sbjct 3474489 ACTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||||||| | |||||| ||| || | ||||| || Sbjct 3476171 GTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCCTCCAACTGTTTGCCG 3476112 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| || ||||| || || || ||||||||||| || ||| | ||| Sbjct 3476111 GCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGAT-TTTAGCTTT 3476053 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | || | ||||| | | ||| || || | ||| | || || || || | ||| Sbjct 3476052 AACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTCTTTCCTGTTAAAGT 3475993 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3475992 CTTGACGAAGATCTGCAT 3475975 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | |||||||| | || || ||||| ||||||||||| || Sbjct 3474213 ATACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCA 3474154 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || |||| || ||| |||| | | ||| ||| | || Sbjct 3474153 GACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGG 3474094 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | ||||| ||||| | | || Sbjct 3474093 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCC 3474034 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || || ||||||||||| Sbjct 3474033 ACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCAT 3473984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419810858043444