Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq61578 141 2e-28 seq48925 114 3e-20 >seq61578 Length=3623949 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | || ||||||||||| |||||||| | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGAT 3475914 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || || ||||| || |||||||| ||||| || || |||||| Sbjct 3475913 AGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGG---TCTGGG 3475857 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| ||||| ||||| || |||| || | ||| Sbjct 3475856 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCA 3475797 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| || |||| ||||||||||| |||||||| Sbjct 3475796 ACTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| ||| || || || || || || ||||| || |||||| Sbjct 3476165 TCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAG 3476106 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || |||||| || |||||||| || |||||||| ||||| ||| Sbjct 3476105 ATAAGACGTTGCTGG---TCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCTTTAACG 3476049 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || | ||| |||||||| ||||| ||||| || || | ||||||| Sbjct 3476048 TTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTG 3475989 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 3475988 ACGAAGATCTGCAT 3475975 >seq48925 Length=1097090 Score = 114 bits (126), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 288239 ATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTAT 288298 |||||| || || || || || | || | |||| || ||| || ||||| || | Sbjct 515411 ATACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGT 515352 Query 288299 AGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAG 288358 |||||| | ||| ||||| |||||||| ||||| || |||||||||| | || ||| Sbjct 515351 AGTCGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGAT 515292 Query 288359 AATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||| || || ||||| || || ||||||||||| || ||||| |||| || | Sbjct 515291 CTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGG 515232 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || | ||| || || || || || || || || ||||| ||||||||| Sbjct 515231 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178699371335786