Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq28274 95.1 9e-15 >seq28274 Length=2233603 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||| |||| || ||||||| ||| ||| | ||||||||||| ||| ||||| Sbjct 589519 ACAGAACTCCATATACCAATGGGTGCGCGACCACCGCGTTCACCACAAATACAGCGACAC 589578 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 ||| |||||||||||||| ||| | || || | ||||||||| | || ||||| || Sbjct 589579 AGAGGCTGACCCACACAACGCTAACCGCGGCTTGTTCTTCTCGCACATCGGCTGGCTTAT 589638 Query 108567 GATGA 108571 ||||| Sbjct 589639 GATGA 589643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||| || | || ||||||| ||| ||| | ||||||||||| ||| ||||| Sbjct 600245 ACAGAACTCCTTGTACCAATGGGTGCGCGACCACCGCGTTCACCACAAATACAGCGACAC 600304 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 ||| |||||||||||||| ||| | || || | ||||||||| | || ||||| || Sbjct 600305 AGAGGCTGACCCACACAACGCTAACCGCGGCTTGTTCTTCTCGCACATCGGCTGGCTTAT 600364 Query 108567 GATGA 108571 ||||| Sbjct 600365 GATGA 600369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381478799987928