Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18715 194 2e-44 seq48925 114 1e-20 seq26895 111 2e-19 seq9460 109 5e-19 seq61578 87.8 2e-12 >seq18715 Length=1377716 Score = 194 bits (214), Expect = 2e-44 Identities = 308/438 (70%), Gaps = 14/438 (3%) Strand=Plus/Plus Query 28067 CCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAAC 28126 || || ||| |||| | ||||||||||| | || || ||||| ||||||||||| ||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 28127 GACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGC 28186 ||| | ||| | ||||||||| | || || || || || ||| ||| ||| Sbjct 1370125 GACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1370184 Query 28187 GCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGC 28246 | || ||||| || | || ||||| || |||||||| |||||||||| || ||||| Sbjct 1370185 GAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGA 1370244 Query 28247 GTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTA 28306 | ||| | ||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct 1370245 CTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACAA 1370304 Query 28307 GCCAATCC-GCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATT 28365 |||| || | |||| || | || | || ||||| |||||||| || | || || || Sbjct 1370305 GCCAGGCCTGAACTT-AAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCTT 1370363 Query 28366 CT-----TTCACATGC-ACGACGCGACCGTGCGCCAAACGTTCATCGATTCCGTCGTGGA 28419 || ||||| | | || || | ||| ||| | ||||| || || Sbjct 1370364 CTTCTTCTTCACCGACAAAGAGAAGAGAGGTCGC------TTCGTTGATTCTGTGAAAGA 1370417 Query 28420 CTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGG 28479 ||||| || |||||||||||||||||||| || || ||||||||||| || || ||||| Sbjct 1370418 TTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGG 1370477 Query 28480 CAAAGGAGCCAATCCCGA 28497 || ||||| || || || Sbjct 1370478 TAAGGGAGCTAACCCTGA 1370495 >seq48925 Length=1097090 Score = 114 bits (126), Expect = 1e-20 Identities = 477/738 (65%), Gaps = 26/738 (4%) Strand=Plus/Plus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 ||||| || ||||| || | || ||||||||| |||| ||||||||||| || ||| Sbjct 839828 TCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCTGTT 839887 Query 152745 TTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGC 152804 || || || ||| | |||| ||||||||| |||| | || | |||| Sbjct 839888 TTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGTTCA 839947 Query 152805 GCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATC 152864 ||||| | ||||||||||| || || ||||| || || | ||| || ||||| Sbjct 839948 GCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCCATT 840007 Query 152865 TCAATCATGCGTTTTGCCT-TCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATC 152923 | ||| | ||||| || |||||||| | ||||| ||||| | | ||| |||| Sbjct 840008 TTAATTGT-TGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAA---TATC 840063 Query 152924 ---CGGTATACCTTCAATGTTCTGAATAGAGCCCTTG-TGTGCAAAAATAGCGT-TTCGT 152978 ||||||| ||||| || ||||| || || ||| |||| | | || | ||| | Sbjct 840064 TTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCAT 840123 Query 152979 AT-TTCGGGCGTGTACACGTTCAGT-TTAATGAGGTC-ATCGATCAAGTACTGGTTGACC 153035 | |||| | | | | || |||| ||| || || || | ||||| || Sbjct 840124 GTCTTCGTCCCATAAATCTGCCTGTGTTAA----GTCTCTCAAT-AAATGATGGTTAACA 840178 Query 153036 ACTTGAAACTCGCCCGCCAACACTCGTCT----CAAATATACATTGCTAGTGAAAGGTTC 153091 || || || || || | ||| || ||||| |||| | ||| | ||||| ||||| Sbjct 840179 ACCTGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGT---TTGAT-GTGAACGGTTC 840234 Query 153092 AAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAA 153151 |||||| || ||||| |||| ||||| || || | || || ||||| || | | Sbjct 840235 AAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAG 840294 Query 153152 CAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAG 153211 | ||||| || | || || ||| | || |||| ||| | ||| || Sbjct 840295 AAGTGAATTGCGGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAG 840354 Query 153212 CGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCC 153271 | | || || | ||||||||| || || || | ||| | || || ||||| || Sbjct 840355 ATCAGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCC 840414 Query 153272 GGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCC 153331 || | ||||| || || || ||| |||||||| || || || || | || || Sbjct 840415 TTCATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCC 840474 Query 153332 ATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGG 153391 || |||||||||||| |||||||| || || |||||||| || || || || Sbjct 840475 GTAATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGG 840534 Query 153392 CATGCGCAGCAGCACAAA 153409 ||||||| || ||||| Sbjct 840535 AATGCGCATTAGTACAAA 840552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | ||| || || || | |||| ||||| || |||||||||||| | Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||| |||| |||| | | || || || || || Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | ||||| | | || || Sbjct 515283 ATGCCCTCTTTGTC-TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 515225 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 138620 ||| | ||| | |||||||| || || |||||||| || |||||||| | ||| Sbjct 515224 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTA 515171 >seq26895 Length=1000185 Score = 111 bits (122), Expect = 2e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 |||| || | |||||| | |||||||||||| ||||| || |||||||| ||||| || | Sbjct 288921 TGGCTTCAATGTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCT 288862 Query 57359 CGCTGCCGGT-GGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCG 57417 | |||| || |||||||||||| | || || || ||||| || || || |||| || Sbjct 288861 C-CTGCTTGTTGGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCA 288803 Query 57418 AACTCGTGAACGTGAAATCCGTG 57440 |||||||| || ||||| ||||| Sbjct 288802 AACTCGTGCACATGAAAACCGTG 288780 >seq9460 Length=1391182 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 124717 TCGCCGCAGCAGCTCGCGTCCGCCGGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGT 124776 ||||| ||||||| ||| | ||||||||||||| | ||| ||||||||| || || Sbjct 538612 TCGCCCGAGCAGCTAGCGCGCAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGC 538671 Query 124777 TGCGCTTTCTGCAAAGTCGAAATTATGCGATGGCAGCCCGGCGACGA-TCCGCTAACGGA 124835 ||||| || || ||||||||||| ||||| ||| | |||||||| ||||||| ||| Sbjct 538672 TGCGCCTTTTGTAAAGTCGAAATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAA-GGA 538730 Query 124836 CCACAAACGATGGGCGCCTCAGTG 124859 |||| | || ||||| || ||||| Sbjct 538731 CCACCAGCGGTGGGCCCCGCAGTG 538754 >seq61578 Length=3623949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | |||||||| || |||||||| ||| Sbjct 3476202 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGA 3476143 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| | ||||| |||| |||| ||||| || ||||| || || Sbjct 3476142 GAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 3476083 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| |||||| ||| | | |||| ||||| | | || || Sbjct 3476082 GATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAAC 3476023 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || | ||| || || || |||||||| Sbjct 3476022 TTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGG 138478 ||||| ||||| ||||| ||||| | ||||| ||| ||||| | ||||| |||| Sbjct 3475940 GACTCTTTTTGGATGTTATAGTC--TGATAGTGTACGACCATCCTCCAACTGTTTGCCGG 3475883 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||| || || |||||||||||||| |||||| ||| | Sbjct 3475882 CGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCTTTAA 3475823 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | | || || |||| || | || || ||||||| || | Sbjct 3475822 CGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCT 3475763 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 3475762 TGACGAAGATCTGCAT 3475747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495870433346640