Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18715 187 2e-42 seq61578 116 4e-21 >seq18715 Length=1377716 Score = 187 bits (206), Expect = 2e-42 Identities = 346/505 (69%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 22307 AAAATTGTCGCCGGCTATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGAC 22366 ||| |||||| | || ||||| || ||||| || |||| | | || || | ||| Sbjct 1369993 AAAGTTGTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGAT 1370052 Query 22367 AAGGTGCCCGTGCCGAACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGA 22426 || || | || || ||| ||||| | | ||||||||| | || || ||||| || Sbjct 1370053 CGTGTACCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGC 1370112 Query 22427 GACGGCATCAACGACGCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCG 22486 ||||||||||||||| | || | | || || ||| | || | ||||| || Sbjct 1370113 GACGGCATCAACGACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1370172 Query 22487 TGCGTCAATAGAGCCGATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAA 22546 ||| | | | |||||||| || | || ||||| |||||||| || | || || Sbjct 1370173 TGCAGCGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAG 1370232 Query 22547 CCTCAAAAAGGCGTGTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATG 22606 || || || || |||| || ||||| ||||| |||||||||||||||||||| ||||| Sbjct 1370233 CCACAGAAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATG 1370292 Query 22607 GCAGTGAAAAGAGCGAATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTG 22666 | | ||| ||| | ||| | || ||| | || | || ||||| || ||||| | Sbjct 1370293 TCTCTCAAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTT 1370352 Query 22667 TCCGATCCGTTTTATCATATGCA-CGACAAGAACGTGAGACAAATTTTCATCGATTCGGT 22725 ||||||| || | || | | || |||||| | |||| ||| | ||||| || Sbjct 1370353 GCCGATCCCTTCT-TCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGT 1370411 Query 22726 GGAAGAGTATTTGATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCC 22785 | |||| | | | | || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 1370412 GAAAGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCC 1370471 Query 22786 CGGCGGCAAGGGGGCGAATCCTAAC 22810 ||||| ||||| || || ||| || Sbjct 1370472 TGGCGGTAAGGGAGCTAACCCTGAC 1370496 >seq61578 Length=3623949 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || ||||| | || |||||||| ||||| ||||| || | Sbjct 3474438 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474379 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| || ||| ||||||||| |||||| || || || Sbjct 3474378 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 3474319 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | ||| | ||||||| || ||| Sbjct 3474318 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACT 3474259 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| |||| || || ||||| |||||||| Sbjct 3474258 TCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || ||||| | || |||||||| ||||| ||||| || | Sbjct 3474210 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474151 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||||| || ||| ||||||||| |||||| | || || Sbjct 3474150 AATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGG 3474091 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | ||| | ||||||| | ||| || Sbjct 3474090 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 3474031 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || || ||||||||||| Sbjct 3474030 TCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCAT 3473984 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || ||||| | || |||||||| ||||| ||||| || | Sbjct 3474666 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474607 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | |||||| || ||| ||||||||| ||||| || || || Sbjct 3474606 AATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGG 3474547 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | ||| | ||||||| || ||| Sbjct 3474546 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACT 3474487 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || ||||| |||||||| Sbjct 3474486 TCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475125231636880