Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq18715 295 6e-75 seq48925 239 4e-58 seq61578 102 7e-17 >seq18715 Length=1377716 Score = 295 bits (326), Expect = 6e-75 Identities = 611/906 (67%), Gaps = 5/906 (1%) Strand=Plus/Minus Query 50148 ATTTGTTTGTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATT 50207 |||| | | ||||||||||| ||||||| |||||| ||| | || || || ||| | Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 50208 CCCGTAAACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATG 50267 || || || ||||||| | || |||| | || ||| ||| || | |||||||| Sbjct 1370906 CCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATA 1370847 Query 50268 GCCACGCCTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAGAAGAACGTTTACCGCA 50327 || || || || | || || | || | ||| |||| | || | | || || || Sbjct 1370846 GCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCA 1370787 Query 50328 AAATCGGTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGT 50387 || || || || || |||| | || |||||| || || || || | || |||||||| Sbjct 1370786 AAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATGA 1370727 Query 50388 CCCAAATCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCT 50447 || | | | | ||||| |||||||||||||| |||||||| | || || | ||| Sbjct 1370726 CCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCC 1370667 Query 50448 AAATAATTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACG 50507 | || || ||||| |||| ||||| ||| | || ||||| | || || |||| Sbjct 1370666 ATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATA 1370607 Query 50508 GCGCTCGTCAATTCGAATTCGCGGCCGGTGACGCGTTGAAGATCGTCCAGCATGTCGCGC 50567 ||| |||| ||| ||| ||||| | ||| |||| || ||| || ||| Sbjct 1370606 GCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGC 1370547 Query 50568 AGATCGCGAAGCAGCACAACGTACGTGAGTCCGTCTTTGTGAGGATCGCCGACTGCGGGA 50627 | || | | ||||||| |||||| || ||| || | | || Sbjct 1370546 AATTCCTTCATTAATTCAACGTAAACATCTCCGTCCTT---AGGGCTTCCTAGGTCAGGG 1370490 Query 50628 TTGGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAA 50687 || || || || ||||| || || ||||||||||| || || |||||||| |||||||| Sbjct 1370489 TTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCAG 1370430 Query 50688 GTCAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGCATG 50747 || || ||||| || || || || || || ||| || || |||| | | Sbjct 1370429 GTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCTTTGTCGGTGAAG 1370370 Query 50748 TGAAAAAATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGCGGG 50807 || || ||||||| | ||||| || || || || |||| | || || | || Sbjct 1370369 AAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCAGGC 1370310 Query 50808 TTGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAAGCC 50867 |||||| ||| | | |||||| ||||| || || |||||||| ||||| ||||| | Sbjct 1370309 CTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCAGGAA 1370250 Query 50868 GAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTAAAA 50927 || | ||||| ||||| ||||| | || ||||||||||||||||| || ||||| ||| Sbjct 1370249 GACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTTTGAAA 1370190 Query 50928 TCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGA-CGGTTTTCAA 50986 || | |||||| ||| || || || || || | ||||||||| || | ||| || Sbjct 1370189 TCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCCTTTAAA 1370130 Query 50987 CGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGACAA 51046 | |||||||| ||| ||||| |||||||| || | ||||||||||| | ||||| || Sbjct 1370129 C-TGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCGTCAG 1370071 Query 51047 ATTGGG 51052 ||| || Sbjct 1370070 ATTAGG 1370065 >seq48925 Length=1097090 Score = 239 bits (264), Expect = 4e-58 Identities = 1123/1775 (63%), Gaps = 20/1775 (1%) Strand=Plus/Minus Query 122915 TCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGAC 122974 ||| |||||||| ||||| ||| | || || | ||||| ||||| || || | Sbjct 841585 TCAGCATATGCTGATGCGAGTCTCGATTGGAATCCACGGTGAAGACATTGATTCAGCCAT 841526 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 ||||||||| ||||| | ||| |||||| ||| || || || |||||||| || ||| | Sbjct 841525 TGAAACTTACAATTTGTTATCTGAAAAATATTTTACTCATGCCAGTCCCACATTATTCTC 841466 Query 123035 CGCCGGCACG--AAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGAC 123092 || | || ||| || || || ||||| || || | | | || || || Sbjct 841465 AGCAGCAACTCCAAGA--CCACAATTATCTTCTTGCTTCCTTATAGCTATGAAAGATGAT 841408 Query 123093 AGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGC 123152 ||||| ||||| ||||| || | | || || || || || |||| || || Sbjct 841407 AGCATTGAGGGTATATATGACACACTAAAACAATGTGCCTTAATCTCAAAATCTGCTGGT 841348 Query 123153 GGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGAC 123212 || |||||| | | || || | | || | || | | ||| | || | Sbjct 841347 GGTATAGGCCTTCATGTTCATTGCATCAGGGCAAAAGGTACCTACATAGCTGGTACTAAT 841288 Query 123213 GGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTC 123272 ||| | || || |||| | ||| || |||| |||||||| | | || | ||| Sbjct 841287 GGAGTTTCCAATGGCCTCGTGCCAATGTTGAGAGTGTACAATAATACAGCCAGGTATGTC 841228 Query 123273 GACCAGGGCGGCAA---ACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTT 123329 ||||| || ||||| ||| || || | || || || || ||||| |||||| | Sbjct 841227 GACCAAGGAGGCAATAAACGACCGGGAGCATTTGCTATTTACCTTGAACCTTGGCACTCT 841168 Query 123330 GATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGC 123389 ||||| | || |||||| || | ||| || | || ||||| ||| | Sbjct 841167 GATGTTTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAGGTCCGAGCTAGA 841108 Query 123390 GATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGC 123449 || || || ||||| |||||| | || ||||| |||||| ||| ||| || | || | Sbjct 841107 GAATTATTTTACGCCTTATGGATCCCAGATTTATTTATGAAACGTGTAGAAAAAGATGAA 841048 Query 123450 GTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAGCGACGTTTACGGCAATCA 123508 ||||| || |||||||| || || ||||| |||| || || || | | Sbjct 841047 ATGTGGAGTCTAATGTGTCCTCATGATTGCCCCGGTCTTGCT-GATTGTTGGGGAGAAGA 840989 Query 123509 GTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGT---TCC 123565 ||||| | ||||| | |||| || | ||| ||| || || || | | ||| Sbjct 840988 ATTTGAAGCATTGTATGAAAAATATGAAC----AGGAAAAAAGATTTGTTAAGCAAGTCC 840933 Query 123566 G-GCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACA 123624 | || | || ||| ||| || || ||| ||||||| ||||| || || || |||| Sbjct 840932 GAGCTCAAGAACTGTGGAAAGCAATAATAGAAGCACAAGTGGAAACGGGCACACCATACA 840873 Query 123625 TGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAAT 123684 |||| || ||||| | || || || |||| ||||| | || | || || ||||||| Sbjct 840872 TGCTGTATAAAGATTCATGTAATAGAAAAAGTAATCAAAAAAATCTTGGCACCATAAAAT 840813 Query 123685 GTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTA 123744 | |||||| | ||| |||||||| | ||||||| || ||| |||| || || |||| Sbjct 840812 GCAGTAATTTGTGCACCGAAATTGTGGAATACACTTCAGCAGATGAAGTTGCTGTTTGTA 840753 Query 123745 ATTTGGCTTCGATTTGCGTGAATCGTTGCGTC---GAAAACGGCGCTTTTAATTTCCAAA 123801 |||| ||||| ||| ||||| | | || ||| | | | || || || Sbjct 840752 ATTTAGCTTCAATTGCTTTGAATAGGTTTGTTAATGAAGATAAAACATACAACTTTATAA 840693 Query 123802 CGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATT 123861 | | ||| | ||||| | | | |||| | || |||||||| |||||||||| Sbjct 840692 AGTTGAAAGAAGTCACAAAGATAATCACACAGAACCTTAATAAAATTATTGATGTTAATT 840633 Query 123862 TTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCA 123921 |||| || || ||||| ||||| || |||||||| | || | || Sbjct 840632 TTTACCCAGTGCCTGAAGCAAAAAATTCTAACATGCGTCACAGACCTATAGGTATTGGAG 840573 Query 123922 TTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAA 123981 | |||||||| || || | |||||| | ||||||| || || ||||| || ||||||| Sbjct 840572 TGCAAGGGTTAGCTGATACATTTGTACTAATGCGCATTCCATATGAAAGTGAAGAAGCAA 840513 Query 123982 AGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCG 124041 ||||| ||||| |||||| || |||||||| || || || || || || | Sbjct 840512 TTAAACTTAACCAACAAATCTTCGAAACCATATATTACGGAGCATTAGAAGCCAGTTGTG 840453 Query 124042 AACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTA 124101 |||| ||| ||| | || | || | || | || || || || |||| ||| | Sbjct 840452 AACTGGCGCAAAAAGAGGGAGTTTATAGTACATATGAAGGAAGTCCTGCAAGCCAAGGCA 840393 Query 124102 TTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAA 124161 | ||||| || ||||||||| || || || || || | ||| ||||| || | | Sbjct 840392 TCTTGCAATATGACATGTGGGATAAAACTCCAACTGATCTCTGGAACTGGTCTATTCTGA 840333 Query 124162 AACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGG 124221 || | || | | || || | || || || || | | || ||||| || | Sbjct 840332 AAGATAAAATTGCCAAACATGGACTCCGCAATTCACTTCTATTAGCTCCAATGCCCACAG 840273 Query 124222 CAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGT 124281 | | || || ||||| |||||||| || || ||||| || |||||||| || | | Sbjct 840272 CGTCTACAGCACAAATCTTAGGAAATAATGAGTCCTTTGAACCGTTCACATCAAACATTT 840213 Query 124282 ACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACT 124341 || |||| || || | || || || || || | || |||||||| || |||| Sbjct 840212 ACCAAAGACGTGTTTTGTCTGGAGAATTCCAGGTTGTTAACCATCATTTATTGAGAGACT 840153 Query 124342 TGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCA 124401 | | | |||| | || ||| ||||| || || || | ||| Sbjct 840152 TAACACAGGCAGATTTATGGGACGAAGACATGAAGAATCTGATAATACACAACAATGGTT 840093 Query 124402 GCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGG 124461 | | || || | || || || | | | | |||| ||||| || |||| Sbjct 840092 CCATTCAAAATATTGAGCGTATACCAAAAGATATTAGAGAGTTGTATAAAACAGTTTGGG 840033 Query 124462 AAATGAAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAA 124521 | || | |||| | |||| ||||||||| ||| |||| || | | || |||| Sbjct 840032 AGATTTCAGTTAAAACAACAATTAAAATGGCCGCTGACAGAGGAGCATTTATAGACCAAA 839973 Query 124522 GTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACA 124581 ||||||| |||||| | ||| || ||||| | || | |||| || ||| Sbjct 839972 GTCAATCGTTTAACATTCATGTGGCTGAACCTAATTATGGAAAATTGACGTCGATTCACT 839913 Query 124582 TGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGG 124641 | |||| |||| | || || ||||| || |||||||| ||| | | || || || | Sbjct 839912 TTTACGCATGGAAAATGGGTCTGAAAACAGGAATGTATTATTTACGCATAAAGCCTGCCG 839853 Query 124642 CCGATGCCATTCAATTTACCGTCGACAAATCTAAA 124676 | |||| ||||| || || || |||||||| ||| Sbjct 839852 CTAATGCAATTCAGTTCACAGTTGACAAATCAAAA 839818 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || ||||||||||| | || || ||||||||||| ||||| || || ||| Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 515344 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || || ||||| || ||| | ||||||| |||||| || || ||| Sbjct 515343 AACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 515284 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| ||||| ||||||||||| ||| | ||| | ||||| || | || || Sbjct 515283 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACC 515224 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | ||||| || || || |||||||| || || ||||| Sbjct 515223 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq61578 Length=3623949 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| | || || || || ||||| ||||| || |||||| | Sbjct 3476201 CCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAG 3476142 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| ||||| || ||| | || | ||||||||||| || || Sbjct 3476141 AGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGG 3476082 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || |||||||| ||||| | |||| | || | || | || | ||||| |||| || || Sbjct 3476081 ATACCTTCTTTGTCTTGGA-TTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAAC 3476023 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || || || |||| ||| || || || || ||||| Sbjct 3476022 TTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || || || |||||||| ||||| || ||| || | || ||| ||||| | Sbjct 3475949 TGGAGTGTCGACTCTTTTTGGATGTTATAGTC--TGATAGTGTACGACCATCCTCCAACT 3475892 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | || | ||||||||||| || || || |||||||| ||||| | || Sbjct 3475891 GTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGA-TT 3475833 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || | || | || | || | ||||| || | || |||||||| |||| || ||||| Sbjct 3475832 TTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTTGCCA 3475773 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || || || || || ||||| Sbjct 3475772 GTCAAGGTCTTGACGAAGATCTGCAT 3475747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451646190922520