Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq48925 91.5 2e-13 seq48068 86.0 1e-11 >seq48925 Length=1097090 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||||||||| || || |||||||| | | | | ||| ||||| || Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || ||| | | ||| |||| | ||| || || | || ||| | || || Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 || |||| |||||||| | || || |||||||| || ||| || || | || ||||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTAT-AAATGCTCCTCTGTCAGCGGC 840003 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 ||| || || | || || ||||||||||| || || || ||| ||||| Sbjct 840004 CATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCT 840057 >seq48068 Length=254185 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 159752 CTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCT 159810 ||||| || ||||| || ||||| || | ||||| | |||||||| || || ||||||| Sbjct 226327 CTGTCAGCAACAAACTCAATGTA-CTGCGACATCAGTTCACAGTTCATGCCGAGCAGCCG 226269 Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG 159870 ||| || || || || | || ||||||| ||| || | ||||| || | | ||||| Sbjct 226268 AACAGGTAGTGCATCTGTAAGGAACTCCTGCTCGATGACAACCGCATCCTTGATGATCTG 226209 Query 159871 CGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930 | ||||| || | | |||||| || | ||| || |||| ||||||||||| Sbjct 226208 CAGCACACGCTCTTTGCTCGGCTTTTGCACTA---GGTATTTGAACATCAGGCACGCAAA 226152 Query 159931 GTCGCAGTGCAGTCCCT 159947 ||| ||| || |||| Sbjct 226151 GTCCGTGTGTAGACCCT 226135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794527156604720