Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq48925 120 7e-22 seq61578 100 7e-16 >seq48925 Length=1097090 Score = 120 bits (132), Expect = 7e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| |||| || | ||| || || || ||||| |||| ||||||||| | ||| || Sbjct 515398 TCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGT 515339 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||| | ||| || ||||||||||| | | ||||| || || ||| || Sbjct 515338 ACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCC 515279 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| ||| |||| || ||||| ||||| | | ||| || || | Sbjct 515278 CTCTTTGTCTTGAAT-TTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTA 515220 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || ||||||||||| ||||| || || || || Sbjct 515219 ACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTG 515180 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||||||||| || ||||| ||||||||| | || ||| |||| |||||| Sbjct 515298 AAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAACA 515357 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||||| || || || |||||| | || ||||| |||||| Sbjct 515358 TCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGA 515398 >seq61578 Length=3623949 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| |||||||| |||| |||||| || | | || Sbjct 3476195 CGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTA 3476136 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||| || ||||||||||| ||||| |||||||| || || ||| Sbjct 3476135 CGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCT 3476076 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || ||| || | ||||||| | ||| || || | Sbjct 3476075 TCTTTGTCTTGGAT-TTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAG 3476017 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || || || || Sbjct 3476016 GGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTG 3475978 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||| || || | ||||||||||| ||| || | ||||||||||||||| Sbjct 3474186 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474127 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 | ||||||||||| | | ||||||| | || || || || || || ||||| Sbjct 3474126 TCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474067 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||||| | | || || || || ||||| ||||| ||||| Sbjct 3474066 GCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTC 3474007 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTT 199635 | || ||||| ||||| || |||||| Sbjct 3474006 AAGGTCTTCACGAAAATCTG---CATTTT 3473981 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| |||||||| ||||||| ||| ||||| | | || | ||||| Sbjct 3475958 AGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCC 3475899 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || ||||||||||| ||||| |||||||| || || |||||| || Sbjct 3475898 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCT 3475839 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || ||| |||| ||||||| | ||| || || | || || || Sbjct 3475838 TGGAT-TTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGT 3475780 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || || || || || || Sbjct 3475779 CTTGCCAGTCAAGGTCTTGACGAAGATCTG 3475750 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||| || || | ||||||||||| ||| || | ||||||||||||||| Sbjct 3474414 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474355 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | ||||||||| || || || || || || ||||| Sbjct 3474354 TTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474295 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||||| | | ||| || || || ||||| || || || || Sbjct 3474294 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTC 3474235 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || ||||| || || Sbjct 3474234 AAGGTCTTGACAAAGATCTG 3474215 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||| || || | ||||||||||| ||| || | ||||||||||| ||| Sbjct 3474642 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGT 3474583 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| | | |||||||| || || || || || || ||||| Sbjct 3474582 TTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474523 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||||| | | ||| || || || ||||| ||||| || || Sbjct 3474522 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTC 3474463 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || ||||| || || Sbjct 3474462 AAGGTCTTGACAAAGATCTG 3474443 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| || |||||||| ||||| | || | ||||||||||| ||||| Sbjct 3476101 CTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAACATCCAG 3476160 Query 200995 AAAGAGTCTACTCTTCAC 201012 || ||||||||||||||| Sbjct 3476161 AAGGAGTCTACTCTTCAC 3476178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177967164598529