Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18715 237 2e-57 seq61578 104 3e-17 seq48925 93.3 5e-14 >seq18715 Length=1377716 Score = 237 bits (262), Expect = 2e-57 Identities = 649/988 (66%), Gaps = 37/988 (4%) Strand=Plus/Plus Query 98734 AAAGTTACGGGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGAT 98793 |||||| || || || ||||| ||||||||||||||| | ||||| |||| ||| Sbjct 1369993 AAAGTTGTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGAT 1370052 Query 98794 AAAGTGCCTATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGC 98853 || || || || ||| |||| || |||||||| ||||| || || |||||||||||| Sbjct 1370053 CGTGTACCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGC 1370112 Query 98854 GACGGTATAAACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCG 98913 ||||| || ||||||||| |||| | | || ||| | | | ||| ||| Sbjct 1370113 GACGGCATCAACGACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCA 1370172 Query 98914 TGCGATAAGAGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAA 98973 ||| | || |||||||| || || ||||| | | ||||| ||||| Sbjct 1370173 TGCAGCGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAG 1370232 Query 98974 CCACAACAGGG--TGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTA 99031 ||||| |||| ||||| | | || || || ||| ||||| || || ||||| | Sbjct 1370233 CCACAGAAGGGACTGTCTTC--CTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGA 1370290 Query 99032 TGGC---CATACGTAAACACAACCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGA 99088 || | || || || || || | || ||||| ||||| ||||| || |||| Sbjct 1370291 TGTCTCTCAAAC---AAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGA 1370347 Query 99089 CTCTTAGCGACCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGT--GTTCGTAGA 99146 ||||| ||| ||||||| || ||| |||| | | ||| | | || ||||| || Sbjct 1370348 CTCTTGCCGATCCCTTCTTCTTCTTCACCGACAAAGAGAAGAG--AGGTCGCTTCGTTGA 1370405 Query 99147 CTCGGTTCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGA 99206 || || || || || | ||||| || ||||||||||| || ||||| ||||| Sbjct 1370406 TTCTGTGAAAGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGA 1370465 Query 99207 GTTTCCTGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACAC 99266 || |||||||| ||||| || |||||||| |||||| |||| |||||||| | Sbjct 1370466 ATTCCCTGGCGGTAAGGGAGCTAACCCTGACCTAGGAAGCCCTA---AGGACGGAGATGT 1370522 Query 99267 TTATGTCACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTGGCCAATAA 99326 ||| || | | || | || | ||| ||| | |||| | || || | Sbjct 1370523 TTACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTG-----AAGAG 1370577 Query 99327 ACGTGT-----TTACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTG 99381 || || ||||| ||||| || | | || || | ||||| || | ||| Sbjct 1370578 ACCGGTAAGAAATACGAGCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTG 1370637 Query 99382 GTCGATTACTCTACAGCCAGTC-----AATATTTGGACCATGTGTTTTTAATGAGTTACG 99436 |||||| |||||| || | |||| |||| || | || | |||||||| | Sbjct 1370638 GTCGAT-----TACAGCGAGGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATG 1370692 Query 99437 ATTTTAAAGGCGCCTGGTCCAACACCGACTTGGGTCATCAAACACCATTGTATGCACCAT 99496 ||||||||||||||||||| || | | | |||||||| ||||| | || || || Sbjct 1370693 ATTTTAAAGGCGCCTGGTCTAATGACACCCTCGGTCATCAGACACCGCTTTACGCTCCTG 1370752 Query 99497 CGTGGAACTCCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAA 99556 | |||||| || | || | || || || || | || || ||| | | | || Sbjct 1370753 CTTGGAACCCCAAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAG 1370812 Query 99557 AAGTGCCTTCTCACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAG 99616 || || | |||||||| ||||| || || |||||||| |||| |||| || | Sbjct 1370813 GCGTCAACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGAGGCTGGACCGGGG 1370872 Query 99617 TGCATGACTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCA 99676 | || ||||| ||||||| || || || || || || ||||| || ||||| | Sbjct 1370873 TTCACAACTACGAAAATAACAATCCATTCACTGGCAACGCGACTGGACCTGTCAAAGGTA 1370932 Query 99677 CCTGGGAAAACGGTGTTGTTGATTATAG 99704 | ||| || ||||||| ||||||||||| Sbjct 1370933 CTTGGCAAGACGGTGTAGTTGATTATAG 1370960 >seq61578 Length=3623949 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| || | ||||| | || || ||||| ||||||||||| Sbjct 3474403 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAA 3474344 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 3474343 GATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474284 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | ||| || || | |||||||||||||| |||| || || || Sbjct 3474283 TTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGAC 3474224 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 3474223 AAAGATCTGCAT 3474212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| || | ||||| | || || | ||| ||||||||||| Sbjct 3474631 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAA 3474572 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | || ||||||||| |||||| ||| | | Sbjct 3474571 GATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474512 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | ||| || || | |||||||| ||||| |||| || || || Sbjct 3474511 TTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGAC 3474452 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 3474451 AAAGATCTGCAT 3474440 >seq48925 Length=1097090 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||||| | | |||||||| || | ||| ||||| ||||| ||||||||| Sbjct 515406 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 515347 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | || || | || || | ||| ||||||||||| ||||| | ||||| || | Sbjct 515346 GACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGT 515287 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||| ||||| || ||| || | | | | ||||| | ||| Sbjct 515286 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCA 515227 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||| |||||||| ||||| || ||||| || ||||| |||||| Sbjct 515226 ACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564791953515240