Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq18715 286 2e-72 seq61578 93.3 3e-14 seq48925 91.5 1e-13 >seq18715 Length=1377716 Score = 286 bits (316), Expect = 2e-72 Identities = 801/1216 (66%), Gaps = 34/1216 (3%) Strand=Plus/Minus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || || | ||| ||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 1371194 TTTCCGAGACCCATGTTCATGGCGTTTAATAGTTCACCATTGTCTGCATCAATCTCCCAC 1371135 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 || || ||||| |||| || ||| | ||||||||| ||||| || | |||| | Sbjct 1371134 GCGAACAAACCGCCCAGCTTATTGTTTCTTACATACTTGCCTTTCGCAATAGTCGATCGG 1371075 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGTAG----ACGTACGGAGATTGTGCA 5990 || |||||||| | || ||| | || | | || || |||| || ||| Sbjct 1371074 GGATTATCGTACGTTATTAGGTCACCGGTCGATGGCCGGAACACATAAGGAGCTTCAGCA 1371015 Query 5991 ATGTTATCATAGAATTGTACAC---TTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042 | |||||| || || | || | ||| | || | |||| | || ||| ||| Sbjct 1371014 ACGTTATCGTA--ATGGAACTCCCATTTGCCCATAGCGATTTCATTTGCTATTTCTCTAT 1370957 Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102 |||| | ||| ||| || ||| |||||||| || || | | || | || || || | Sbjct 1370956 AATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTGCCAGTGAATG 1370897 Query 6103 GATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCT 6161 |||| || |||||| | | | || || ||| ||||||| ||||| |||||||| ||||| Sbjct 1370896 GATTGTTATTTTCGTAGTTG-TGAACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCC 1370838 Query 6162 ACTACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTT 6221 || || | || | | | ||| |||| | ||| || | | |||| | || Sbjct 1370837 ACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTG 1370778 Query 6222 GTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTT 6281 || ||| |||| || || ||| | |||||||||||||||||| ||| ||| | | Sbjct 1370777 GTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATGACCGAGGGTG 1370718 Query 6282 TCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGT 6341 || | ||||| |||||||||||||| || |||| | || || | ||| | || Sbjct 1370717 TCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTATTTC 1370658 Query 6342 TGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTT 6401 || || || | |||||||| || | || || || | || |||| |||||| ||| Sbjct 1370657 TGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGAAGTC 1370598 Query 6402 AGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTT- 6460 || | || ||||| ||| || | | ||| | |||||| || || ||||| Sbjct 1370597 AGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTC 1370538 Query 6461 -TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCAC 6519 | || | ||| | | | | ||| || | | || || ||||| || | Sbjct 1370537 ATTAATTCAACGTAAACATCT--CCGTCC---TTAGGGCTTCCTAGGTCAGGGTTAGCTC 1370483 Query 6520 CTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCA 6579 | |||||||| || || |||||||| || || || |||||||| || ||||| ||| | Sbjct 1370482 CCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCAGGTTAGAA 1370423 Query 6580 AAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAA 6639 ||| || |||| |||||| || | || || || |||| | || | | | Sbjct 1370422 GAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCTTTGTCGGTGAAGAAGAAGA 1370363 Query 6640 ACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC 6699 | |||||| ||| ||||| || || || || || | ||| | | || || || Sbjct 1370362 AGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCAGGCCTGGCTT 1370303 Query 6700 GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACA- 6758 | |||| | ||| | ||| |||||||| |||||||| ||||| || ||| |||| Sbjct 1370302 GTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCAGG--AAGACAG 1370245 Query 6759 -CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTT 6817 || || ||||| || ||||| || |||| || ||||| | ||||||||||||| Sbjct 1370244 TCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTTTGAAATCTTC 1370185 Query 6818 TCGGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACTG-GGTATTTGTTGTTTAAGCG 6876 |||||| ||| ||| ||| | || | | ||||| | | | ||||| | Sbjct 1370184 GCGGCCGCTGCATGATCGTTGAAGAGCTTGGA---AACTGCCTTCGATCTCCTTTAAAC- 1370129 Query 6877 CATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGAT 6936 ||||| | || ||||| || ||||| || || || |||||||| | ||| || |||| Sbjct 1370128 TGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCGTCAGAT 1370069 Query 6937 TAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGT 6996 ||||||| || | ||| | || ||| ||| ||||||||||||||| ||||||| Sbjct 1370068 TAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCAACAAAGT 1370009 Query 6997 AAGCGCCCACAACATT 7012 | || || ||||| || Sbjct 1370008 ACGCTCCGACAACTTT 1369993 >seq61578 Length=3623949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| || | ||| || ||||| || | ||| || || || || || ||||||| Sbjct 3476203 CGCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG 3476144 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | || |||| ||||| ||||| ||| | || || | ||| ||||| || | || Sbjct 3476143 AGAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGG 3476084 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||||| ||||| ||||| || | | ||||||| ||| | Sbjct 3476083 GGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAA 3476024 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || || || || |||||||| || |||||||||||||| Sbjct 3476023 CTTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||| || | || |||||||| || ||||| || | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGAT 3475914 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| ||||| ||||| ||| | || || | ||| ||||| || | ||| Sbjct 3475913 AGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGG 3475854 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||||| || | | ||||||| | ||| || Sbjct 3475853 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACT 3475794 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || || || || || |||||||||||||| Sbjct 3475793 TCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 >seq48925 Length=1097090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550 || ||||| | | || ||||| || ||||| | ||| || || || || || |||| Sbjct 515403 CCTCCTCGAAGCCTCAACACCAAGTG--AAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 515346 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| ||| |||| || || ||||| ||| | || || || | |||||||| | | Sbjct 515345 ACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 515286 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||| |||||||| ||||| ||| | | ||| || ||||| | | ||| Sbjct 515285 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATA--GTGTCAGAGGCTTC 515228 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||||||||| | |||||||||||||||||||| Sbjct 515227 AACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347102093601971