Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18715 187 2e-42 seq61578 127 2e-24 seq48925 118 1e-21 seq48068 113 5e-20 >seq18715 Length=1377716 Score = 187 bits (206), Expect = 2e-42 Identities = 350/507 (69%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 62212 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 62271 ||||| || ||||| ||||| || || ||||| || | || | |||||||| | |||| Sbjct 1370492 GGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTC 1370433 Query 62272 CACGTCTGCAGAAACTCGCGCGCCGACTCGACGAACGCGCGCCGCGCGTTCGC---GTCG 62328 || || | ||||| || | | || || ||||| ||| || | | ||| | |||| Sbjct 1370432 CAGGTTAGAAGAAAATCTTTCACAGAATCAACGAA-GCGA-CCTCTC-TTCTCTTTGTCG 1370376 Query 62329 -TGCATATGGTAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAG 62387 || | | | | || ||||||| || |||||||| |||||||| || || | || Sbjct 1370375 GTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAG 1370317 Query 62388 GTGCGGGTGCGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCT 62447 | || |||| |||| | ||||||||| || |||||||| ||||| || || | Sbjct 1370316 TTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATT 1370257 Query 62448 CCACGCGGTCACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAG 62507 ||| | | || ||||| || ||||| || | || |||||||||||||| | | | Sbjct 1370256 CCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAAC 1370197 Query 62508 TTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGA 62567 |||||| || |||||||| ||| || || || || || | ||| ||||| |||| Sbjct 1370196 TTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTC 1370137 Query 62568 CTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATG 62627 ||| | ||||||||||||||||| || ||||| || || | ||| ||||||| ||||| Sbjct 1370136 CTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATG 1370077 Query 62628 CGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTC 62687 ||| || || || | || || ||| | || || | | | ||| || ||||| || Sbjct 1370076 CGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTC 1370017 Query 62688 GACGAAATAGGCGCCCACCACCTTGCC 62714 || || || || || || || || || Sbjct 1370016 AACAAAGTACGCTCCGACAACTTTTCC 1369990 >seq61578 Length=3623949 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| |||| || || | | Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | |||| |||||| ||||||| |||||||| || || ||| | ||||| Sbjct 3476035 GACACTATGGAGAACG-TTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCA 3476093 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| ||||||||| |||| || | || || ||| ||| ||||| Sbjct 3476094 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAA 3476153 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||| ||| | | |||||| Sbjct 3476154 CATCCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGC 3476202 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || || ||| |||| || || || | Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||||| ||||||| |||||||| || || ||| | ||||| Sbjct 3475807 GACACTATCGAGAACG-TTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCA 3475865 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| ||||||||| |||| || | || || || ||||| || Sbjct 3475866 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAA 3475925 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || |||| || || ||||| || ||| Sbjct 3475926 CATCCAAAAAGAGTCGACACTCCACTTGGTACTCCGT 3475962 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | |||||||| ||||||||| | || || ||| | Sbjct 3473981 AAAATGCAGATTTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTAGAGGTGGAGCCT 3474040 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| |||| | || |||| ||||| ||||| || ||| | | | Sbjct 3474041 TCGGACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGCC 3474100 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | | || | ||| ||| |||||||||| || | ||||| | |||||| Sbjct 3474101 CAGCAGAGATTGATCTTCGCCGGCGAACAGCTGGAAGATGGACGCACATTGTCTGACTAC 3474160 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || || | || |||||||| || || || Sbjct 3474161 AACATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCG 3474198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || |||||||||||||| | || || || || | Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474331 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| |||||||||||||| || | ||||| | ||||||||| Sbjct 3474332 CAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474391 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || || | || |||||||| || || || Sbjct 3474392 ATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCG 3474426 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || || || | Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | || |||| ||||| ||||| || ||| | ||||| Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474559 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| ||||||||| |||| || | ||||| | ||||||||| Sbjct 3474560 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAAC 3474619 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || || | || |||||||| || || || Sbjct 3474620 ATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCG 3474654 >seq48925 Length=1097090 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||| |||||| || ||||||||||| |||||||| |||||||| || | || || || | Sbjct 515172 AAACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAG 515231 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || | |||| | ||| | |||| ||||| | ||||||||||| ||||| | | Sbjct 515232 CCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAG 515291 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || || | | || | ||| ||||||||| | || || | || || | ||||| Sbjct 515292 ATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACT 515351 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||||||| |||||| | || || || |||||| || Sbjct 515352 ACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTG 515389 >seq48068 Length=254185 Score = 113 bits (124), Expect = 5e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| ||||| || || |||||||| |||| || ||||| | |||||| || | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || | || || || || |||||||||| || || || || || || | Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | || || || | ||| |||||||||||||| |||| ||||| || | Sbjct 225294 CAACTATTCTTTCCCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTCTG 225235 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| |||||| || || || | ||||| | || || ||||| Sbjct 225234 CCTTCTTCTTT-ACACATGGTAAAGTTTCAACTGCATTGAACAA 225192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || ||||| || |||||||| || ||||| ||||||||||| || |||||| ||| || Sbjct 224848 GAGTACATCTCAGAGTGTACATTTTCCATAGCGATTTGAAATCCATAAAAGAACCTTGCT 224789 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | | || |||||||| | || ||||| || | ||| || || || || || || Sbjct 224788 TCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTAAATTCTCATTTACTATACCATCA 224729 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 || || ||||| |||| ||| || || || || || | ||| ||| || || | Sbjct 224728 GAAGCAGCAAAAAATGCCAACACATGTTTAATAAAGTGCCTCTCACAGTCCTTTAAACTT 224669 Query 133366 TCCCAGTC 133373 ||||| || Sbjct 224668 TCCCAATC 224661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499777744766080