Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq43624 253 8e-62 seq42076 170 8e-37 seq48925 129 2e-24 seq14022 116 1e-20 seq35724 111 6e-19 >seq43624 Length=797805 Score = 253 bits (280), Expect = 8e-62 Identities = 477/693 (69%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || || ||| | ||||| || | ||| |||||||| | || ||| |||| |||||||| Sbjct 47148 GGTATAGATTTGGGAACAACATATTCCTGTGTAGGCGCTTGGCAACATGGTAATGTAGAC 47207 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || ||||| || |||||| ||||||||||||| | || || || || | Sbjct 47208 ATAATTGCAAACGATCAAGGAAACAGAACTACTCCTTCCTATGTTGCGTTCACTGACACG 47267 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAAATCAAT--GGTAAATTCAAATGCCAAAAACACAG 451097 ||| |||| | || | || || ||| ||| |||| | || | | || || Sbjct 47268 GAACGACTGATCGGAGATGCAGCGAAA--AATCAGGTAGCTATGAACCCTGATAATACTA 47325 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157 | | ||||| ||||| || ||||| || | |||||| ||| |||||| || |||| | Sbjct 47326 TTTTCGATGCCAAACGATTGATTGGGCGAAAGTATGACGATCCTACTGTGCAGCAAGACA 47385 Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217 |||| | | | | | || | ||| | || || || ||| | ||||||||| | Sbjct 47386 TAAAACATTGGCCCTTTAAAGTCATCAATGATAACGGGAAACCCAAGATTCAAGTATCAT 47445 Query 451218 ATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTT-CATCTATGGTTCTTACTAAA 451276 |||||| || ||||| || ||||||| ||||| || | ||||| || |||||| Sbjct 47446 TTAAAGGAAAAGCTAAAGTATTCACTCCTGAGGAAATCAGCAGC-ATGGTGCT-ACTAAA 47503 Query 451277 A-TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 | ||||||||||||| || ||| | || ||| ||| |||| || ||||| || Sbjct 47504 AATGAAAGAAACAGCTGAGTCGTATTTAGGCAACAAAGTAACTAATGCCGTTATTACAGT 47563 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || ||||| |||||||| | ||| | || || |||||||| || ||| ||| ||||| Sbjct 47564 ACCTGCTTACTTCAATGACTCTCAAAGACAGGCTACTAAAGACGCGGGAGCTATCGCTGG 47623 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 |||| || ||| |||| || ||||||||||| || || ||| | || || || |||| Sbjct 47624 CCTAAACGTACTTAGAATAATAAATGAACCTACCGCTGCAGCTTTGGCTTACGGTCTAGA 47683 Query 451456 AAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCA 451515 || || || || |||| || | ||| | |||||||| || || || ||| Sbjct 47684 CAA---GAATTTAAAAGGAGAACGCAAAGTGTTAATCTTTGATTTAGGAGGCGGTACTTT 47740 Query 451516 TGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAAGTAAAGGCAACCAATGG 451572 |||| || | ||| ||||||| || || | |||||||||||||| || ||| Sbjct 47741 TGATGTATCCATCCTTACAATTGATGAAGGTTCTCTTTTTGAAGTAAAGGCTACAGCTGG 47800 Query 451573 TGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||||||||| ||||||||| |||| || Sbjct 47801 AGACACTCATCTAGGCGGTGAAGATTTTGACAA 47833 >seq42076 Length=1078381 Score = 170 bits (188), Expect = 8e-37 Identities = 261/369 (71%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 |||| ||| | |||||||||||||| ||||||||||| | ||||||||| ||||||| Sbjct 714074 AAAAAGTTTACACCTGAAGAAATTTCCTCTATGGTTCTAAGCAAAATGAAACAAACAGCT 714015 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 || ||| | || | | || ||||| || || || ||||| || || ||||| || Sbjct 714014 GAGATGTATCTCGGAGGTACTGTGACTGACGCGGTTATAACTGTACCAGCGTATTTTAAC 713955 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 || | ||||| |||||||||||||| || || ||||| || ||||| |||||| || Sbjct 713954 GACTCTCAACGCCAAGCAACTAAAGACGCTGGGGCGATTGCCGGATTAAACGTTCTTAGA 713895 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA 451471 ||||| |||||||| |||||||| ||||| || ||||| || || || | ||| | Sbjct 713894 ATTATCAATGAACCAACAGCAGCCGCTCTCGCTTATGGTTTA-GACAAAGATTTGAA--A 713838 Query 451472 GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTT 451531 | ||| || ||| || || | || || |||| || || ||| ||| ||| ||||| Sbjct 713837 GGAGAGAAGAATGTTCTAATTTTCGACCTTGGAGGTGGCACTTTTGACGTTTCAATACTT 713778 Query 451532 TCAAT---TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGA 451588 || |||| | || ||||| || ||||| ||||| ||||| || || Sbjct 713777 CAGATATCGGAAGGATCATTGTTCGAAGTTAAATCAACCGCAGGTGACACTCACCTTGGT 713718 Query 451589 GGTGAAGAT 451597 || || ||| Sbjct 713717 GGCGAGGAT 713709 >seq48925 Length=1097090 Score = 129 bits (142), Expect = 2e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || || |||||||| || || | || |||||| | || Sbjct 515176 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 515235 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || ||| | | ||| ||||||||||| || || || ||||| || ||||| Sbjct 515236 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 515295 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | || || ||| | || ||||| | ||||||||| | || ||| | || || || Sbjct 515296 GCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAA 515355 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| ||||||||||||| || || || || ||||| Sbjct 515356 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGA 515401 >seq14022 Length=299639 Score = 116 bits (128), Expect = 1e-20 Identities = 254/380 (67%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| ||| ||| || || ||||||||| | || ||||| ||||| ||| Sbjct 211645 TACAAAGGAGAAGATAAGACCTTCTTCCCTGAAGAAGTGAGCTCAATGGTGCTTACGAAA 211586 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| |||||||| || || |||| | || ||||||||||||| ||| Sbjct 211585 ATGAAGGAAACAGCCGAGGCCTACCTTGGCAAAACGGTGCAGAATGCAGTAATTACGGTT 211526 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || || ||||||||| ||||| | || || ||||||||||| || || ||||| Sbjct 211525 CCAGCGTACTTCAATGATTCACAAAGACAGGCCACTAAAGATGCGGGTACCATCTCTGGT 211466 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | |||||||| || || || || ||||| || || ||||| | || || || || | Sbjct 211465 CTGAATGTTCTCCGTATCATCAACGAACCGACTGCTGCTGCGATTGCGTACGGTCTTGAC 211406 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 || ||| | | | |||| ||| | | | || ||| |||| || || ||| Sbjct 211405 AA---AAAGGGAGGTGGAGAACGTAATGTACTTATTTTCGATCTTGGCGGTGGTACTTTC 211349 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| || | || | || || ||||| | || ||||| || | ||| |||||| Sbjct 211348 GATGTGTCCATCCTGACCATCGAGGATGGCATCTTCGAAGTGAAATCCACCGCTGGTGAC 211289 Query 451577 ACTCATCTAGGAGGTGAAGA 451596 || || | ||||| || || Sbjct 211288 ACCCACTTGGGAGGCGAGGA 211269 >seq35724 Length=271492 Score = 111 bits (122), Expect = 6e-19 Identities = 245/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || |||||||||||||| || | |||||||| || || ||||| ||||| || ||| Sbjct 259872 TTCGCTCCTGAAGAAATCTCTGCCATGGTTCTCACCAAGATGAAGGAAACTGCTGAAGCT 259813 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || | || || || | || || | || || |||||||| ||||| ||||| Sbjct 259812 TACCTCGGAAAGAAGGTCACCCACGCCGTCGTCACCGTACCCGCTTACTTCAACGATGCT 259753 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || ||||| || || ||| || || | || || | | || || Sbjct 259752 CAGCGTCAGGCCACCAAAGACGCCGGTGTTATCGCCGGACTTAACGTCATGAGGATCATC 259693 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || || || || || ||||| | || || || || | || || || || ||| Sbjct 259692 AACGAGCCCACCGCCGCTGCCATCGCGTACGGTCTCGACAA---GAAGGA---AGGAGAG 259639 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||| | | |||||||| || ||||| || ||| || ||| | ||| | || Sbjct 259638 AAGAATGTGCTCGTATTTGACTTGGGTGGTGGTACTTTCGACGTGTCTCTGCTTACCATC 259579 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || ||||| ||| || || || ||||| |||||||| || ||||||||| Sbjct 259578 GACAATGGTGTGTTTGAGGTAGTCGCGACTAACGGTGACACTCATCTTGGTGGTGAAGAT 259519 Query 451598 ATTGAT 451603 | ||| Sbjct 259518 TTCGAT 259513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974118891106196