Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq18715 167 2e-36 seq48925 134 9e-27 seq61578 104 2e-17 >seq18715 Length=1377716 Score = 167 bits (184), Expect = 2e-36 Identities = 639/989 (65%), Gaps = 27/989 (3%) Strand=Plus/Minus Query 5564 GCTATGTTTCTATAATCCACCACACCGTTTTCCCAGGTGCC---GGCAA-TCTTGTCG-G 5618 ||||| | ||||||||| || ||||||| || ||| || || | || || |||| | Sbjct 1370969 GCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCG 1370910 Query 5619 TCGCCACACCGGTAAATACATTATTGTTCACCTGGTCGTGCACTCCGGACCACCCACGAC 5678 | |||| || ||| ||| || || | | || ||| || |||| ||| || || | Sbjct 1370909 TTGCCA-----GTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTC 1370855 Query 5679 CGTACATGGCTACACCCACAATTAGCTTCTTCGATTCGACGCTCTGATTTAACAGACGCT 5738 ||||||| ||||||||||| | | |||||| | | ||||| ||| | || | | Sbjct 1370854 CGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATT 1370795 Query 5739 TGATTGAAAAATCTGTCGTGTATGTCTCGCCTGGGTTCCACGATGGAGCGTACAGAGGTG 5798 | | ||| || || || || || || |||||||| | |||||||| || |||| Sbjct 1370794 TCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTG 1370735 Query 5799 TCTGGTGTCCCAGATC--CGTTAACGACCAGGCACCCTTGTAGTCGTACGTCATAACAAA 5856 |||| || || || | ||| |||||||| || || | || || |||| | || Sbjct 1370734 TCTGATGACCGAGGGTGTCATTA--GACCAGGCGCCTTTAAAATCATAACTCATGAGGAA 1370677 Query 5857 GATGTGATCAAGATACCTTTGTGCGCTGGC-GTAGTCGACAACGTCGATCTTGTCATGTC 5915 |||||||| | || | || || || || ||| ||||| || | ||||| || || Sbjct 1370676 AATGTGATCCATGTATTTCTGAGC-CTCGCTGTAATCGACCACTTGAATCTTATCCCATC 1370618 Query 5916 CCGCGCCGATAGCACTTGTCAATTGTAACCGTTTACCCCGCTTCTCGCCCAACTCGTCAA 5975 | || | ||||| |||| | | ||||| || || | |||| | Sbjct 1370617 CAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCA 1370558 Query 5976 GCATCACGCGAAGTTCCCGCAACAAAAGAGTGTACGTATTGCGGTCCACCTCGGCATTAC 6035 ||| | || | |||| || || | ||| || | |||| | || || | Sbjct 1370557 ACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCCT--TAGGGCTT-C 1370501 Query 6036 CCAACACAGGATTAGCACCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAA 6095 | | |||| ||||| ||||| || || || || ||||| || || || || ||||| | Sbjct 1370500 CTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGA 1370441 Query 6096 AGAACTTCCATGTCTCCAGAAACTCGCGGACACTTGTGACGAAC--ACCTTACGTTTGGA 6153 |||||||||| || ||||| || ||| ||||| |||| | | | Sbjct 1370440 AGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCT- 1370382 Query 6154 GTCATCGTTCATAAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGAC 6213 | ||| | | || | || |||||| | ||||| || || ||||| ||||| | Sbjct 1370381 -TTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAAT 1370323 Query 6214 TGTCAACGAAGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACGC 6273 | | | ||| || |||||| | ||||||||| |||||||| || ||||| | Sbjct 1370322 TTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGG 1370263 Query 6274 TTCGTTGTACGCCTCAACGCCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAAT 6333 ||| || | | | || |||||||| || || | |||||||| ||||||||| Sbjct 1370262 TTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAAT 1370203 Query 6334 ACTCACCTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTG 6391 | || ||||| || ||||| || ||| ||| || || || | || | || Sbjct 1370202 AGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTC 1370143 Query 6392 GGAATCTGCTTGAGGGCGTCGTTTATGCCGTTACCACCACAAATTGGAATGAACCCGTAC 6451 | |||| ||| | |||||| ||||||| || || ||||| |||||||| |||||| Sbjct 1370142 G--ATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTAC 1370085 Query 6452 AGCAGGTGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACT 6511 | || |||||||||||||| || ||||| || | || || | ||| || || Sbjct 1370084 AAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACA 1370025 Query 6512 CCCCACTCCACGAAATACGCACCGACGAC 6540 ||||| || || || ||||| ||||| || Sbjct 1370024 CCCCATTCAACAAAGTACGCTCCGACAAC 1369996 >seq48925 Length=1097090 Score = 134 bits (148), Expect = 9e-27 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34750 CATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGT 34809 |||| ||||| | | |||||| |||||||||| ||| ||| ||||| ||||| |||| Sbjct 515408 CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGT 515349 Query 34810 CCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | || | | ||| |||| || | |||||| ||||| || || | || |||||| ||| Sbjct 515348 CGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTG 515289 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCT 34929 | || | ||||| ||||| ||| ||| ||| || | | || | ||| ||| | Sbjct 515288 GTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTT 515229 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | ||||||||||| |||||||| || || || ||||||||||| Sbjct 515228 CAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq61578 Length=3623949 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || | | ||| |||| ||||||||||| ||||| || Sbjct 3474402 TCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAG 3474343 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||||||||||| ||||| || || | Sbjct 3474342 ATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 3474283 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| || | || |||||||| || || | ||||| ||| Sbjct 3474282 TCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACA 3474223 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3474222 AAGATCTGCATA 3474211 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || | | ||| |||| |||| |||||| ||||| || Sbjct 3474630 TCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAG 3474571 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||||| | || | ||||||||||| ||||| || || | Sbjct 3474570 ATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 3474511 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| || | || ||||| || || || | ||||| ||| Sbjct 3474510 TCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACA 3474451 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3474450 AAGATCTGCATA 3474439 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||| || ||||||||||| || || | || |||| ||| Sbjct 3475955 ACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCCTCC 3475896 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| ||||| || || || |||||||||||| | || | || || ||||| Sbjct 3475895 AACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 3475836 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| ||| | || | || || ||||| |||| ||| || || || Sbjct 3475835 ATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTTG 3475776 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || |||||||||||| Sbjct 3475775 CCAGTCAAGGTCTTGACGAAGATCTGCATA 3475746 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || | | ||| |||| |||||||||| ||||| || Sbjct 3474174 TCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAG 3474115 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| || | || | ||||||||||| ||||| || || | Sbjct 3474114 ATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 3474055 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||| || ||||| | |||||||| Sbjct 3474054 TCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACG 3473995 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 3473994 AAAATCTGCATTTT 3473981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324383602403736