Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq48925 466 2e-126 seq48068 132 5e-26 >seq48925 Length=1097090 Score = 466 bits (516), Expect = 2e-126 Identities = 1180/1794 (66%), Gaps = 42/1794 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || || |||| ||||| |||| || | ||| | |||||||||||||| || Sbjct 839824 TTTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCC 839883 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | ||| | ||||| | || || || || || ||||| |||| |||| Sbjct 839884 TGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGG 839943 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||| |||| |||||||| || || |||||||| ||||| ||||| || Sbjct 839944 TTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGC 840003 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | || | ||| || |||||||| ||||||||||| | | | |||| Sbjct 840004 CATTTT--AATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATA 840061 Query 47211 TCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| ||| | | | | |||||||||| || || ||| | ||| || || || Sbjct 840062 TCTTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTC 840121 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | || | ||| | | | | ||||| | | || | |||| | ||||||| Sbjct 840122 ATGTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACC 840181 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATA 47384 || ||||||||||| | || ||| || | | || || ||| | ||||| | Sbjct 840182 TGGAATTCTCCAGACAAAAC---ACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAG 840238 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA-- 47442 || ||||||||||| || ||||| || || || ||||| ||||| || | |||||| Sbjct 840239 GACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCAT---TGGAGCTAATAGA 840295 Query 47443 AGCTATTT-CTTACTCCATATTT-----TTGTATCTNNNNNNNNNNNNGTTTCCAATCCC 47496 || | || | | ||||| ||| || ||||| ||| | || Sbjct 840296 AGTGAATTGCGGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGA-----CCAGTTCC 840350 Query 47497 AAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAG 47556 | ||||| | |||| || ||| | |||||||| | || |||| ||| ||| Sbjct 840351 AGAGATCAGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGAC 840410 Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616 || | |||||| ||||| || | | || || ||||||||||| ||||| |||| Sbjct 840411 TTCCTTCATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATG 840470 Query 47617 CACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAA 47676 | | |||||||| ||||| || |||| | ||| || || |||||||| |||| Sbjct 840471 CTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCAT 840530 Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736 | ||| |||||||| || || ||||| || |||||||| || |||| Sbjct 840531 ATGGAATGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTC 840590 Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796 | ||| | |||||| | ||||| || | ||| || || | ||| ||||||| Sbjct 840591 TGTGACGCATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTT 840650 Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGT 47856 |||| || | |||| | || || |||| | | | | Sbjct 840651 TATTAAGGTTCTGTGTGATTATCTTTGTGACTTCTTTCAACTTTATAAAGTTGTATGTTT 840710 Query 47857 TATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 ||| | ||||||||||||| | || || || |||| |||||| ||||| || |||| Sbjct 840711 TATCTTCATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCAT 840770 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 || ||| |||| | ||||| | || | ||||| ||||| || || || | || Sbjct 840771 CTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGAT 840830 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| |||||| | | ||||||| || || || ||||| | ||||| || |||| Sbjct 840831 TTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTT 840890 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGC-- 48091 | | || | ||| || || | ||||| ||||| || | | | ||| || | Sbjct 840891 CCACTTGTGCTTCTATTATTGCTTTCC--ACAGTTCTTGAGCTCGGACTTGCT-TAACAA 840947 Query 48092 -TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTA 48149 | | || || ||||| ||||| ||| || |||||||| || ||| ||| || | Sbjct 840948 ATCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACA-ATCA 841006 Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 | | || || || |||| ||||||||| | ||| ||||| |||| ||| | Sbjct 841007 GCAAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGT 841066 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269 ||||||||| |||||| ||||| | || |||||| || |||| || | ||||| Sbjct 841067 TTCATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCT 841126 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 |||||| ||||| |||| || || | ||| || | | ||||| ||||| ||||| | Sbjct 841127 TTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGG 841186 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || || || | | | || ||||||||||| |||||||| || | ||| ||||| ||||| Sbjct 841187 TAAATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTA 841246 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| |||||||| || | ||||| || | ||||| || || | || || Sbjct 841247 TTGTACACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAG 841306 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 | || | || || || | || || ||||||||||| || ||| || ||| Sbjct 841307 GTACCTTTTGCCCTGATGCAATGAACATGAAGGCCTATACCACCAGCAGATTTTGAGATT 841366 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | ||||| |||| || || ||||| || || || || ||||||||| ||||| || Sbjct 841367 AAGGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATA 841426 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 || || ||| ||| | ||| || |||| ||| |||||||| ||| ||| Sbjct 841427 AGGAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCA 841486 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCA 48688 ||| |||| |||| || |||||||| || || |||||||| | ||||| || || || Sbjct 841487 TGAGTAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCA 841546 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 | || || || || || || ||||| | ||||| |||||||||||| |||| Sbjct 841547 CCG-TGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCAGCAAT 841599 >seq48068 Length=254185 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 19229 TAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCT 19288 ||| ||||| ||| ||||| || |||||| || || || | |||||| ||||| || | Sbjct 224871 TAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTT 224812 Query 19289 GAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCA 19348 ||||||| ||||| | |||||||| || || ||||| |||||| || || | Sbjct 224811 GAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTA 224752 Query 19349 AATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT 19408 |||| ||||| ||||| |||||| ||| ||||||||||| || |||||||||||||| | Sbjct 224751 AATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAAGT 224692 Query 19409 G 19409 | Sbjct 224691 G 224691 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || | ||||||||| | || | || || |||||||| || || ||||| ||| Sbjct 225385 AAGGTCAGACCAGGCATTAAGCCGCGCTTCTTCAACCAGAAAATTGATGCAAAGCTACCA 225326 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 |||||||| || ||||| || || ||||| ||||||| |||||| ||| | | || Sbjct 225325 GAAAAGAAGATTCCTTCCACAGCAGCAAAGGCAACTATTCTTTCCCCAAAGTTTGCTGTC 225266 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 || | ||||||| ||||||||| || |||||||| ||||||||||| Sbjct 225265 TTGCTGGCGATCCATTGCAGTGCCCAGTCTGCCTTCTTCTTTACACATGG 225216 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||||||| ||||| || || ||||| || ||||| || || ||||||||||| | | Sbjct 224550 TTGGATAAATCAACTTCCTCCACAGTCCAGAACGAAGCTTCAGCCTTTTTATACATTTGC 224491 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || |||||| ||||||| |||||||| || || || Sbjct 224490 CAAATATCAGGATATTGGATAGGAAAGATGACGAA 224456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561664825390680