Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9460 179 3e-40 seq18715 168 5e-37 seq53576 89.7 4e-13 seq61578 84.2 2e-11 >seq9460 Length=1391182 Score = 179 bits (198), Expect = 3e-40 Identities = 393/594 (66%), Gaps = 60/594 (10%) Strand=Plus/Plus Query 7536 AGAGGCTCGGTTAAGCACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCA--AACT 7593 |||||||| ||| || ||| | || ||||||||| |||||| ||| | | || Sbjct 538571 AGAGGCTC----AAG-ACGTTCGACAAGTGGCCCGTGGACTTTCTTTCGCCCGAGCAGCT 538625 Query 7594 ATGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTTTGT 7653 | || |||||||| || || || | || || | |||||||| || ||||| |||||| Sbjct 538626 A--GCGCGCAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGT 538683 Query 7654 AAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAGTGG 7713 ||||| ||||||||||| ||||| || || ||||| || | |||||||| | | |||| Sbjct 538684 AAAGTCGAAATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGG 538743 Query 7714 GCACCGCAGTGTCCGTTTCTG----------------------------CGTTCGTT--- 7742 || |||||||| || |||||| || ||| Sbjct 538744 GCCCCGCAGTGCCCCTTTCTGAGGCGGCACGCGACCGCCGGCAACGTGCCGCTCGAGAGC 538803 Query 7743 --GACCGTCGGCGGGCGGGACGAGGTTGG--TTCGGGC--------GCG--------GTG 7782 || || || ||| || |||||| || | || || ||| ||| Sbjct 538804 CCGAGCGCCGCCGGCCGCGACGAGTGCGGCGTGCGCGCCCCGCCCAGCGCCACGCCCGTG 538863 Query 7783 CACACCCCCGGCCCAGCCAACCCTAGGTACGCGTTGGAGCAAGTGCGTCTGCTCACGTTC 7842 | || |||||||| | |||| | ||||| | ||| | |||||| | ||| ||| Sbjct 538864 CGCATGCCCGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTC 538923 Query 7843 AAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATAC 7902 || ||||||||| | | || ||||||||| || |||| || || || || || | | Sbjct 538924 AAAGACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTC 538983 Query 7903 TACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGG 7962 ||||| |||| ||| || | || || || |||||||| ||||| || ||||| || ||| Sbjct 538984 TACACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGG 539043 Query 7963 GAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATATGTC 8022 ||| | |||| | ||||||||||| |||||||||||||| || ||||| || || Sbjct 539044 GAGAACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTT 539103 Query 8023 AAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAAGCGTGCGCC 8076 | || || ||||| || || || || || || || | || || |||||| Sbjct 539104 CAGCTGGTGAAAGGCCGCGACTACGTACAAAAAGTGATGTCGGAGGCCTGCGCC 539157 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8170 CGTAACGTGTGCTTTGTTCCGTGCGGACATGTGGTGGCATGCGCCAAGTGCGCTTTAACC 8229 || ||||||||||| || |||||||| || |||||||| |||||||||||||| | | Sbjct 539287 CGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTGTCG 539346 Query 8230 ACGAACACGTGCCCAATGTGTAGGCAGAAGTATATAAACGCTGTACGTGTTTACTATTCT 8289 ||| ||| |||||| ||||| ||| || || | ||||| || || | |||| || Sbjct 539347 ACGGACAAGTGCCCGATGTGCCGGCGGACGTTCACGAACGCGGTGCGGCTGTACTTCTCG 539406 Query 8290 TGA 8292 ||| Sbjct 539407 TGA 539409 >seq18715 Length=1377716 Score = 168 bits (186), Expect = 5e-37 Identities = 487/747 (65%), Gaps = 7/747 (1%) Strand=Plus/Plus Query 27710 GCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCCAACAAACTACCCATA 27769 || |||||||| || |||||||| || ||| | | || | | | |||| || Sbjct 1370005 GCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTACCGATT 1370064 Query 27770 CCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACGGTATCAAC 27829 || |||||||| ||| | ||||||| || | || |||||||| || ||||| |||||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 27830 GATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAAAGTCATGCTCAAACC 27887 || || |||| ||||| || | ||| | | || ||| |||||| || Sbjct 1370125 GACAGTTTAAAGGAGATCG--AAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCC 1370182 Query 27888 GAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACCGCAAAAGG 27947 | | || || | || || ||||| |||| ||| || || || || || |||| Sbjct 1370183 GCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGG 1370242 Query 27948 GTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATCAAAC 28007 | | | ||||| || || ||||| || |||||||| ||| ||||| | |||||| Sbjct 1370243 GACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAAC 1370302 Query 28008 GACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAGCGATCCAT 28067 | | || | || || || || || || || || |||||||| |||||| | Sbjct 1370303 AAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCT 1370362 Query 28068 TCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGCGCGAATTTC 28127 |||| || | |||| | ||| | | || || || |||||| || |||| Sbjct 1370363 TCTTCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGATTTTC 1370422 Query 28128 TGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGTGGAAAGG 28187 | | ||| ||||||||||| ||||| || ||| | || ||||| || || || || |||| Sbjct 1370423 TTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAGG 1370482 Query 28188 GAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGTACACCGCGCTGTTGC 28247 |||| ||||| | | || | ||| | |||| | | ||| | | || Sbjct 1370483 GAGCTAACCCTGACCTAGGAAGCCCTAAG---GACGGAGATGTTTACGTTGAATTAATGA 1370539 Query 28248 GCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATCGCGTCTACCAACTAA 28307 ||| | | ||| || |||| | | ||| | | || | ||| | || | Sbjct 1370540 AGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGA 1370599 Query 28308 CCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACTACGCTTCGGCCCAAA 28367 | |||||||||| || || ||||| || ||||||||| | ||| ||| || | Sbjct 1370600 CTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAGCGAGGCTCAGA 1370659 Query 28368 AACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCGCCTGGTCCAACACCG 28427 || | |||| ||||||||| | |||||||| ||||||| ||||||||||| || | Sbjct 1370660 AATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGTCTAATGACA 1370719 Query 28428 ACGTGGGCCATCAGACACCGCTTTACG 28454 | | || ||||||||||||||||||| Sbjct 1370720 CCCTCGGTCATCAGACACCGCTTTACG 1370746 >seq53576 Length=1474168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 9073 AAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTG 9132 |||||||||||||| || ||||| ||||| || || || || || || |||| | | Sbjct 1315002 AAGATTTGTTCACAGATCAATTGTGCAATTCTATCGCCTTTCTTTACATCAAAATGTTGA 1315061 Query 9133 TCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCA 9192 || ||||||||||| || || ||||| || ||||| | ||||| ||||| || ||||| Sbjct 1315062 TCAGAATGATTGAAGAGTACTACTCCAACATTACCACGATAATCTTCATCAATGACACCG 1315121 Query 9193 GC 9194 || Sbjct 1315122 GC 1315123 >seq61578 Length=3623949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||| ||||| ||||| ||||| | | || | || ||| Sbjct 3474192 ACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCC 3474133 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| | ||||| || |||| || ||| || | | ||| | |||||||||||| Sbjct 3474132 AGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGG 3474073 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||| | || || || || Sbjct 3474072 ATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTG 3474013 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || || ||||||||||| Sbjct 3474012 CCCGTCAAGGTCTTCACGAAAATCTGCAT 3473984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380644243168401