Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq18715 214 2e-50 seq61578 104 2e-17 seq48925 91.5 1e-13 >seq18715 Length=1377716 Score = 214 bits (236), Expect = 2e-50 Identities = 592/894 (66%), Gaps = 14/894 (2%) Strand=Plus/Minus Query 106120 ACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGTTGGGATCGACG 106179 || || ||||| || || |||||||| || || || || | || || || || | |||| Sbjct 1370873 ACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACG 1370814 Query 106180 TCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTTCGGAATTCCAA 106239 |||| ||||| | || | | | || || || |||| | || |||||| Sbjct 1370813 CCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAA 1370754 Query 106240 CTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTG-TTCGACCACGCCCCTTTAAA 106298 ||| || || | || || |||| || || ||| || ||||| || |||||||| Sbjct 1370753 GCAGGAGCGTAAAGCGGTGTCTGATGACCGAGGG-TGTCATTAGACCAGGCGCCTTTAAA 1370695 Query 106299 ATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTATAGTTTACCAC 106358 ||| ||||||||||||||||| | |||| ||||| || || ||| | || | ||||| Sbjct 1370694 ATCATAACTCATGAGGAAAATGTGATCCATGTATTTCTGAGCCTCGCTGTAATCGACCAC 1370635 Query 106359 GGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATTTGCCCGTTTG 106418 ||| || || | || || || |||||| || | ||||| || || || | Sbjct 1370634 TTGAATCTTATCCCATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTC 1370575 Query 106419 --CAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACATATGTTTCG 106476 ||| | |||| | ||| | ||||| || | || | | || || || Sbjct 1370574 TTCAGAA--AGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCT 1370517 Query 106477 GCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGAAATTCCCAA 106536 |||| | | || || | | ||| || || || || ||||| || ||||||||| Sbjct 1370516 CCGTC-CTTAGGGCTTC--CTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAA 1370460 Query 106537 TCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACAGAATTTACA 106596 || ||||| || || || || || ||||| | | | ||| || || ||||||| || Sbjct 1370459 TCGATATCAACACCGTCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACG 1370400 Query 106597 AACACGTTTCTTTTTTCAACGTCA-TGCATAAAATAGAAGGGGTCTGATAGCGTCCAACC 106655 || ||| || || ||| || | || | ||||||| || | || ||||| || Sbjct 1370399 AAGCGACCTCTCTTCTCTTTGTCGGTGAAGAAGA-AGAAGGGATCGGCAAGAGTCCAGCC 1370341 Query 106656 GCCTATAGACGGAAGCACTTTTAAATGC-GGATTTGCCAATTTAGCCGCCATCAACTGTC 106714 || || || || || | |||||| | | || | || ||| | ||||| ||| | Sbjct 1370340 TCCGATGGAAGGTAGAA-TTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGAC 1370282 Query 106715 CAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTTCTGTATGG 106774 ||||||| || ||||| || || ||||| | |||| || || || |||||||| | | Sbjct 1370281 CAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAG 1370222 Query 106775 CAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGATTTTTGCA 106834 | ||||| || ||||||||||||||||| ||||| |||| || |||||||| ||| | Sbjct 1370221 CGGCCCACGGGTCGTGAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAA 1370162 Query 106835 AAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCACCGCCGCAGA 106894 || || ||||| || || ||||| ||||| || || || || ||||| | Sbjct 1370161 GAGCTTGGAAACTGCCTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAA 1370102 Query 106895 TGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTATCTACGGGAA 106954 | ||||| ||||||||||| | ||| | | ||| || | ||| || ||| || || | Sbjct 1370101 TAGGAATGAAACCGTACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGA 1370042 Query 106955 AATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACAGTTTTGTCCT 107008 | || | || || |||||||| ||||| ||||| ||||| ||| |||| Sbjct 1370041 ATTTTCTTGGGTAAACACCCCATTCAACAAAGTACGCTCCGACAACTTT-TCCT 1369989 >seq61578 Length=3623949 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || ||||| || || ||||| ||| |||| ||||||||| Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 28614 GAGACGGTGGCCGATC--TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || ||| || | | |||| |||||| |||||||| || | ||| ||| | Sbjct 3476035 GACACTATGG-AGAACGTTAAAGC-TAAAATCCAAGACAAAGAAGGTATCCCCCCAGACC 3476092 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 | || | |||||||| || |||||||| ||||| ||| || | ||| | ||||||| Sbjct 3476093 AGCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCT--CCGATTA 3476150 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || |||||||| ||| |||| Sbjct 3476151 CAACATCCAGAAGGAGTCTACTCTTCACTTGGT 3476183 >seq48925 Length=1097090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || |||||| || || |||||||| | |||||||||||||| || || ||| | Sbjct 515173 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 515232 Query 28610 TTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 || || || | | || | || || |||| || ||||||||||| | || || Sbjct 515233 CTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCACCAG 515291 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 |||| || ||| | ||||| || |||||||| || |||||| || || |||| | Sbjct 515292 ATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACT 515351 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | ||||| || || ||||| || || ||| |||| || || | |||||||| Sbjct 515352 ACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 515403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425077199352873