Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq48925 203 2e-47 >seq48925 Length=1097090 Score = 203 bits (224), Expect = 2e-47 Identities = 309/439 (70%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||||||||||||||| ||||| | || |||||||| ||||| |||| | |||||||| Sbjct 841069 CATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTT 841128 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||||||||| |||||||| || ||||||| ||| |||||||| ||||| | || Sbjct 841129 GCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTA 841188 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 |||||||| || || ||| || ||||| || || || || || || | ||| Sbjct 841189 AATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATT 841248 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | | ||| |||||||||| || | ||| | |||| ||| || || | | || | || Sbjct 841249 GTACACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGT 841308 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||| | | || || ||| |||||| || || |||||||| ||||||| || Sbjct 841309 ACCTTTTGCCCTGATGCAATGAACATGAAGGCCTATACCACCAGCAGATTTTGAGATTAA 841368 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||| | | | ||| || | || || | ||||||||| ||||||| ||| | Sbjct 841369 GGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAG 841428 Query 26293 AAAACAAGAAGATAATTGCG---AATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 || |||||||||||||| | |||||| | |||| |||||||| || | || Sbjct 841429 GAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGA---GAATAATGTGGGACTGGC 841485 Query 26350 ATGAGTATAATATCCTTCA 26368 ||||||| ||||| |||| Sbjct 841486 ATGAGTAAAATATTTTTCA 841504 Score = 113 bits (124), Expect = 2e-20 Identities = 305/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 24703 ATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTT 24762 |||||||||||| ||||||| | | ||||| ||||||| || || || || | ||| Sbjct 839872 ATAATACATTCCTGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTT 839931 Query 24763 TGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTG 24822 | || || | | | | | | ||| | ||||||| |||| | ||| | Sbjct 839932 TCCATAATTAGGTTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCC 839991 Query 24823 TCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCT 24882 ||| || || || | | ||| | ||||| | || || || || ||||||| || Sbjct 839992 TCTGTCAGCGGCCATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAA 840051 Query 24883 CTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTC---TCTCAA 24939 |||| | || || |||| |||| |||||||||||| || ||||| | | | | Sbjct 840052 CTCTCTAATATCTTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTAT 840111 Query 24940 TAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATCTCTAATCAAGT 24998 |||||| || | |||| ||| | || | | | | ||| ||||| | || | Sbjct 840112 CAGATTCT-TCATGTCTTCGTC--CCATAAATCTGCCTGTGTTAAG-TCTCTCAATAAAT 840167 Query 24999 GTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGT 25056 | | || | | ||||||||||||||||| | ||| ||| ||| |||||| || Sbjct 840168 GATGGTTAACAACCTGGAATTCTCCAGACAAAACACGTCT--TTGGTAAATGTTTGATGT 840225 Query 25057 GAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAA 25116 ||| |||||||| | |||||||||||||||||||| | ||||| ||||| |||||| Sbjct 840226 GAACGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGG 840285 Query 25117 TGCTATTAATAGCGAATTTCTCAAACCATATTTAACAAT 25155 |||| || || ||||| | | |||| ||| |||| Sbjct 840286 AGCTAATAGAAGTGAATTGCGGAGTCCATGTTTGGCAAT 840324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252845136031025