Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq48925 140 4e-28 seq53576 87.8 2e-12 >seq48925 Length=1097090 Score = 140 bits (154), Expect = 4e-28 Identities = 468/720 (65%), Gaps = 19/720 (3%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||||| || || | || |||| ||| || || |||||||| ||||| || || ||| Sbjct 840918 TGGAAAGCAATAATAGAAGCACAAGTGGAAACGGGCACACCATACATGCTGTATAAAGAT 840859 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | ||||| | || ||||| ||||| ||| | || || || || || ||| | ||| Sbjct 840858 TCATGTAATAGAAAAAGTAATCAAAAAAATCTTGGCACCATAAAATGCAGTAATTTGTGC 840799 Query 75998 ACGGAAATTTTAGAGTACACAGATAAG--GATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 || |||||| | || ||||| | || ||||| |||||||| ||||| || |||| Sbjct 840798 ACCGAAATTGTGGAATACACT--TCAGCAGATGAAGTTGCTGTTTGTAATTTAGCTTCAA 840741 Query 76056 TCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 | || | | || ||| |||||||| | || | | | | ||| | | | Sbjct 840740 TTGCTTTGAATAGGTTTGTTAATGAAGATAAA---ACATACAACTTTATAAAGTTGAAAG 840684 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 || |||||||||| | || | || || || | | ||||| |||||||| || | Sbjct 840683 AAGTCACAAAGATAATCACACAGAACCTTAATAAAATTATTGATGTTAATTTTTACCCAG 840624 Query 76176 TTGAGACTGC-GCGAAAG--TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 | | ||| || ||| ||||| ||||| ||||||||||| ||| | || || |||| Sbjct 840623 T---GCCTGAAGCAAAAAATTCTAACATGCGTCACAGACCTATAGGTATTGGAGTGCAAG 840567 Query 76233 GTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGA 76292 | | || ||| |||| | | ||| ||| ||| || ||||| | | Sbjct 840566 GGTTAGCTGATACATTTGTACTAATGCGCATTCCATATGAAAGTGAAGAAGCAATTAAAC 840507 Query 76293 TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGG 76352 | || | ||||| |||||||| ||| ||| | | | || || ||||||||| ||| Sbjct 840506 TTAACCAACAAATCTTCGAAACCATATATTACGGAGCATTAGAAGCCAGTTGTGAACTGG 840447 Query 76353 CTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTC 76412 | || | || ||| |||| ||| || ||| || |||||| | | | Sbjct 840446 CGCAAAAAGAGGGAGTTTATAGTACATATGAAGGAAGTCCTGCAAGCCAAGGCATCTTGC 840387 Query 76413 AGTTTGATATGTGGGAAGGTGAAAC-CAAGCTCAACTACG--ACTGGGATGTTCTCAAGG 76469 | | ||| |||||||| | |||| | | || | || | ||||| | |||| || | Sbjct 840386 AATATGACATGTGGGA---TAAAACTCCAACTGATCTCTGGAACTGGTCTATTCTGAAAG 840330 Query 76470 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCT 76529 | || | | || || || || ||| | | || |||||||| ||||| | Sbjct 840329 ATAAAATTGCCAAACATGGACTCCGCAATTCACTTCTATTAGCTCCAATGCCCACAGCGT 840270 Query 76530 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589 | || ||||||||||| || |||||||| | ||||||||| | |||| ||||||| |||| Sbjct 840269 CTACAGCACAAATCTTAGGAAATAATGAGTCCTTTGAACCGTTCACATCAAACATTTACC 840210 >seq53576 Length=1474168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| | || || ||| | || |||||| |||||||||| ||| Sbjct 321007 CCTGGTACTGGAAAGACTTTACTGGCTAAAGCAACAGCTGGTGAAGCAAATGTCCCCTTC 321066 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | ||| |||| | | ||| |||| ||||||||||| || ||| | || || Sbjct 321067 ATTACGGTG-TCTGGTTCTGAATTTTTGGAAATGTTTGTTGGCGTTGGTCCTTCTAGAGT 321125 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||| || || || || || || || ||| | || |||||||| || Sbjct 321126 TCGTGATATGTTTTCTATGGCACGTAAACATGCTCCTTGCATTTTGTTTATTGATGAAAT 321185 Query 175494 TGATGCGGTGGG 175505 ||||||||| || Sbjct 321186 TGATGCGGTTGG 321197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596098406958560