Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq48068 132 7e-26 seq61578 107 3e-18 seq48925 102 1e-16 seq18997 86.0 9e-12 >seq48068 Length=254185 Score = 132 bits (146), Expect = 7e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||| ||| | ||||| || || || ||||| || ||||| ||||| |||| Sbjct 224886 TTTCTTTGGGATCCCTAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACAT 224827 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG-GATATTGAATCTCGCTA 18529 |||||||||| || ||||| | |||||| | || || || ||| ||||| || Sbjct 224826 TTTCCATAGCGATTTGAAATCCATAAAAGAACCTTGCTTCACCGAT-TTGAACTTCTTGT 224768 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 |||||| ||||| ||||||||||| |||||||| |||| || || ||||||||||| Sbjct 224767 GAAAATCGCTCTACTAAATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAAC 224708 Query 18590 ACATATTTAATGAAATG 18606 |||| |||||| || || Sbjct 224707 ACATGTTTAATAAAGTG 224691 >seq61578 Length=3623949 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || ||||||||||| ||| || Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || || ||||| || ||||| || Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474331 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || ||||| |||||| | || || || || || || Sbjct 3474332 CAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474391 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || |||||||| Sbjct 3474392 ATTCAGAAAGAGTCAACCCTGCATTTAGT 3474420 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || ||||||||||| ||| || Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| || || ||||| || ||||| || Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474559 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || ||| | |||||| | || || || || || || Sbjct 3474560 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAAC 3474619 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || |||||||| Sbjct 3474620 ATTCAGAAAGAGTCAACCCTGCATTTAGT 3474648 >seq48925 Length=1097090 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | || || ||||| || || ||||| || |||| || Sbjct 515176 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 515235 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || ||| ||||| ||||| ||||| ||||| || ||||| || Sbjct 515236 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 515295 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||||| || ||| | |||||| | || || || || || || Sbjct 515296 GCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAA 515355 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || ||||| || ||||| || | |||| ||| Sbjct 515356 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGGT 515404 >seq18997 Length=881 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||| ||||| ||||| ||||| ||||| |||||||| || || |||||||||| |||||| Sbjct 117 GTACTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTACCCTCTAATGATATTAGATTCAT 176 Query 17929 AAAATCAAATGGATT 17943 || ||||||||||| Sbjct 177 GAAGTCAAATGGATT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731293940049200