Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq48068 129 1e-24 seq48925 118 2e-21 seq61578 100 6e-16 >seq48068 Length=254185 Score = 129 bits (142), Expect = 1e-24 Identities = 148/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 || || || || ||||| ||||| |||||| ||||||||| ||||||||| |||||| Sbjct 224857 ATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTTGAAATCCATAAAAG 224798 Query 50166 TGTCTTGCTTCT--GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATA 50223 |||||||| || | |||||||| | ||||| || |||||||||||| || Sbjct 224797 AACCTTGCTTCACCGATT--TGAACTTCTTGTGAAAATCGCTCTACTAAATTCTCATTTA 224740 Query 50224 CAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTAT 50283 | ||||||||||| || || || ||||| || || | ||||||||| || | ||| | Sbjct 224739 CTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAAGTGCCTCTCACAGT 224680 Query 50284 CTTTTAAATTTTCCCAA 50300 | |||||| |||||||| Sbjct 224679 CCTTTAAACTTTCCCAA 224663 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||||| |||| ||||| || || || | || |||||||| || | ||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | ||| || ||||||||||| |||| ||||||||| || || || ||| ||||| | Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 49966 CTATTATTCTTGCTCCAAA 49984 | | ||||||| | ||||| Sbjct 225294 CAACTATTCTTTCCCCAAA 225276 >seq48925 Length=1097090 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| |||| ||| | || || || || | || | || || ||| || || || | Sbjct 515405 TACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 515346 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| || || ||||| || || ||||| ||||| || ||||| |||| Sbjct 515345 ACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 515286 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || ||||| ||||| ||||| ||||||||| |||| || || | ||| | Sbjct 515285 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 515226 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | |||| || ||||||||||| || | ||||| | || ||||||||| Sbjct 515225 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 >seq61578 Length=3623949 Score = 100 bits (110), Expect = 6e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| || || | ||||||||| | || | |||||| || || || ||| Sbjct 3474213 ATACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCA 3474154 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| |||| |||| || || ||||| |||||||| || | || Sbjct 3474153 GACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGG 3474094 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || ||||| || | || || | || Sbjct 3474093 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCC 3474034 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || ||||| || || || || || || | || ||||||||||| Sbjct 3474033 ACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTT 3473981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983682981297450